filterGO: Filter GO.
In GOSim: Computation of functional similarities between GO terms and gene products; GO enrichment analysis
Description
Usage
Arguments
Value
Note
Author(s)
See Also
Examples
View source: R/geneSimilarity.R
Description
Filter out genes from a list not mapping to the actual ontology. Genes
not mapping to the currently set ontology ("BP","MF","CC") and not
having one of the predefined evidence codes (default is to use all
evidence codes) are removed.
Usage
1
filterGO(genelist)
Arguments
genelist
character vector of Entrez gene IDs
Value
List with items
"genename"
gene ID
"annotation"
character vector of GO terms mapping to the gene within the actual ontology
Note
The result depends on the currently set ontology. IMPORTANT: The result refers to the GO library that was used to precompute the information contence of GO terms.
Author(s)
Holger Froehlich
See Also
setOntology, setEvidenceLevel, getGOInfo, calcICs
Examples
1
GOSim documentation built on Nov. 8, 2020, 11:05 p.m.
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Description Usage Arguments Value Note Author(s) See Also Examples
View source: R/geneSimilarity.R
Description
Filter out genes from a list not mapping to the actual ontology. Genes not mapping to the currently set ontology ("BP","MF","CC") and not having one of the predefined evidence codes (default is to use all evidence codes) are removed.
Usage
1 | filterGO(genelist)
|
Arguments
genelist |
character vector of Entrez gene IDs |
Value
List with items
"genename" |
gene ID |
"annotation" |
character vector of GO terms mapping to the gene within the actual ontology |
Note
The result depends on the currently set ontology. IMPORTANT: The result refers to the GO library that was used to precompute the information contence of GO terms.
Author(s)
Holger Froehlich
See Also
setOntology, setEvidenceLevel, getGOInfo, calcICs
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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