FunciSNPsummaryOverlaps: Summarizes FunciSNP results by overlaps
In FunciSNP: Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
Description
Usage
Arguments
Note
Author(s)
References
See Also
Examples
Description
This will summarize the total number of YAFSNPs identified by the number of biofeatures per tagSNP
Usage
1
FunciSNPsummaryOverlaps(dat, rsq = 0)
Arguments
dat
FunciSNP data object
rsq
Rsquare value used to filter the summary report
Note
NA
Author(s)
Simon G. Coetzee (maintainer: scoetzee@gmail.com); Houtan Noushmehr, PhD (houtan@usp.br)
References
SG. Coetzee, SK. Rhie, BP. Berman, GA. Coetzee and H. Noushmehr, FunciSNP: An R/Bioconductor Tool Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs., Nucleic Acids Research, In press, 2012 (doi:10.1093/nar/gks542).
See Also
getFSNPs, FunciSNPplot, FunciSNPAnnotateSummary, FunciSNPtable, FunciSNPbed
Examples
1
2
3
data(glioma);
glioma.anno <- FunciSNPAnnotateSummary(glioma);
FunciSNPsummaryOverlaps(glioma.anno, rsq = 0.2);
FunciSNP documentation built on Nov. 8, 2020, 4:56 p.m.
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Description Usage Arguments Note Author(s) References See Also Examples
Description
This will summarize the total number of YAFSNPs identified by the number of biofeatures per tagSNP
Usage
1 | FunciSNPsummaryOverlaps(dat, rsq = 0)
|
Arguments
dat |
FunciSNP data object |
rsq |
Rsquare value used to filter the summary report |
Note
NA
Author(s)
Simon G. Coetzee (maintainer: scoetzee@gmail.com); Houtan Noushmehr, PhD (houtan@usp.br)
References
SG. Coetzee, SK. Rhie, BP. Berman, GA. Coetzee and H. Noushmehr, FunciSNP: An R/Bioconductor Tool Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs., Nucleic Acids Research, In press, 2012 (doi:10.1093/nar/gks542).
See Also
getFSNPs, FunciSNPplot, FunciSNPAnnotateSummary, FunciSNPtable, FunciSNPbed
Examples
1 2 3 | data(glioma);
glioma.anno <- FunciSNPAnnotateSummary(glioma);
FunciSNPsummaryOverlaps(glioma.anno, rsq = 0.2);
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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