writeTrackFiles: Write track files of an selected 'assay'

In FourCSeq: Package analyse 4C sequencing data

Description

The files are saved in the specified folder. The filenames are the combination of the assay name, the selected column name and the corresponding file extension.

Usage

writeTrackFiles(
  object,
  assay = "counts",
  folder = "tracks",
  format = "bw",
  removeZeros = TRUE
)

Arguments

object	A FourC object.
assay	Character vector selecting the assay of the FourC object that should be saved as track file.
folder	Path relative to the project folder, where the results are track files should be saved.
format	Character vector specifying the format of the output. Can either be 'bedGraph' or 'bw'. 'bw' is the default.
removeZeros	Define whether fragments with zero counts should be included with value 0 or not. On default zeros are removed.

Details

writeTrackFiles

Value

Message whether the track export of assay was successful.

Author(s)

Felix A. Klein, [e-mail]

Examples

 



                       
data(fc, package="FourCSeq")
metadata(fc)$projectPath = tempdir()

fc <- combineFragEnds(fc)
fc

writeTrackFiles(fc)

FourCSeq documentation built on Nov. 8, 2020, 7:08 p.m.