Files in FourCSeq
Package analyse 4C sequencing data
NAMESPACE
DESCRIPTION
build/vignette.rds
data/datalist
data/fcf.rda
data/fc.rda
R/plotResults.R
R/reference_fragments.R
R/classes.R
R/zzz.R
R/functions.R
vignettes/literature.bib
vignettes/FourCSeq.Rnw
vignettes/readmapping.pdf
man/normalizeRPM.Rd
man/FourC.Rd
man/plotNormalizationFactors.Rd
man/addPeaks.Rd
man/getNormalizationFactors.Rd
man/getAllResults.Rd
man/countFragmentOverlaps.Rd
man/addViewpointFrags.Rd
man/addFragments.Rd
man/findViewpointFragments.Rd
man/distFitMonotoneSymmetric.Rd
man/writeTrackFiles.Rd
man/getDifferences.Rd
man/combineFragEnds.Rd
man/getZScores.Rd
man/plotDifferences.Rd
man/countFragmentOverlapsSecondCutter.Rd
man/plotZScores.Rd
man/plotScatter.Rd
man/fc.Rd
man/distFitMonotone.Rd
man/smoothCounts.Rd
man/fcf.Rd
man/getReferenceSeq.Rd
man/getDistAroundVp.Rd
man/smoothHitPerCent.Rd
man/plotFits.Rd
inst/CITATION
inst/doc/FourCSeq.R
inst/doc/FourCSeq.Rnw
inst/doc/FourCSeq.pdf
inst/extdata/primer.fa
inst/extdata/dm3_chr2L_1-6900.fa
inst/extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam.bai
inst/extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam.bai
inst/extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam.bai
inst/extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam
inst/extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam
inst/extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam
inst/extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam
inst/extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam
inst/extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam.bai
inst/extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam.bai
inst/extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam
inst/extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam.bai
inst/extdata/python/demultiplex.py
