examdata_objs: Precompiled objects of GeneGroups, FuncAnnotGroups classes...

In FoldGO: Package for Fold-specific GO Terms Recognition

Description

up_groups

object of GeneGroups class compiled from up-regulated genes from rna-seq experiment on auxin treatment of Arabidopsis thaliana roots

down_groups

object of GeneGroups class compiled from down-regulated genes from rna-seq experiment on auxin treatment of Arabidopsis thaliana roots

up_annotobj

object of FuncAnnotGroups class compiled from lists of up-regulated genes from rna-seq experiment on auxin treatment of Arabidopsis thaliana roots

up_annotobj

object of FuncAnnotGroups class compiled from lists of down-regulated genes from rna-seq experiment on auxin treatment of Arabidopsis thaliana roots

Usage

up_groups

down_groups

up_annotobj

down_annotobj

Format

up_groups

object of GeneGroups class

down_groups

object of GeneGroups class

up_annotobj

object of FuncAnnotGroupsTopGO class

up_annotobj

object of FuncAnnotGroupsTopGO class

Examples

# load GeneGroups object with up-regulated genes from rna-seq experiment on auxin treatment
# of Arabidopsis thaliana roots
data("up_groups")
# load FuncAnnotGroups object compiled from lists of up-regulated genes
# from rna-seq experiment on auxin treatment of Arabidopsis thaliana roots
data("up_annotobj")

FoldGO documentation built on Nov. 8, 2020, 7:50 p.m.