dist_by_closeness: Distance by Closeness
In EnrichedHeatmap: Making Enriched Heatmaps

Description Usage Arguments Details Value Author(s) Examples

Distance by Closeness

1	dist_by_closeness(mat)

mat

A numeric matrix where the distance is calculated by rows.

For two rows in the matrix, assume x_1, x_2, ..., x_n1 are the column index of none-zero values in row 1 and y_1, y_2, ... y_n2 are the column index for non-zero values in row 2, the distance between the two rows based on the closeness is calculated as:

1	d_closeness = sum_i sum_j(\|x_i - y_j\|) / (n_1*n_2)

A dist object.

Zuguang Gu <z.gu@dkfz.de>

x1 = c(0, 0, 0, 0, 1, 1, 1, 0, 0, 0)
x2 = c(0, 0, 0, 1, 1, 1, 0, 0, 0, 0)
x3 = c(1, 0, 0, 0, 1, 1, 0, 0, 0, 0)
m = rbind(x1, x2, x3)
dist(m)
dist_by_closeness(m)