count_table.partial: Example count table of GTEx RNA-seq experiment
In ERSSA: Empirical RNA-seq Sample Size Analysis
Description
Count table generated using data downloaded from Recount2 website
that processed Raw GTEx dataset. Table has samples on columns and genes
on rows.
This is a partial count table containing 1000 genes and 4 replicates each
from heart and muscle. Used for testing purposes and to shorten run time.
References
https://jhubiostatistics.shinyapps.io/recount/
Mel<c3><a9>, Marta, Pedro G. Ferreira, Ferran Reverter, David S. DeLuca, Jean
Monlong, Michael Sammeth, Taylor R. Young, et al. <e2><80><9c>The Human Transcriptome
across Tissues and Individuals.<e2><80><9d> Science 348, no. 6235 (May 8, 2015):
660<e2><80><93>65. https://doi.org/10.1126/science.aaa0355.
Collado-Torres, Leonardo, Abhinav Nellore, Kai Kammers, Shannon E. Ellis,
Margaret A. Taub, Kasper D. Hansen, Andrew E. Jaffe, Ben Langmead, and
Jeffrey T. Leek. <e2><80><9c>Reproducible RNA-Seq Analysis Using Recount2.<e2><80><9d> Nature
Biotechnology 35, no. 4 (April 2017): 319<e2><80><93>21.
https://doi.org/10.1038/nbt.3838.
ERSSA documentation built on Nov. 8, 2020, 7:44 p.m.
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Description
Count table generated using data downloaded from Recount2 website that processed Raw GTEx dataset. Table has samples on columns and genes on rows. This is a partial count table containing 1000 genes and 4 replicates each from heart and muscle. Used for testing purposes and to shorten run time.
References
https://jhubiostatistics.shinyapps.io/recount/
Mel<c3><a9>, Marta, Pedro G. Ferreira, Ferran Reverter, David S. DeLuca, Jean Monlong, Michael Sammeth, Taylor R. Young, et al. <e2><80><9c>The Human Transcriptome across Tissues and Individuals.<e2><80><9d> Science 348, no. 6235 (May 8, 2015): 660<e2><80><93>65. https://doi.org/10.1126/science.aaa0355.
Collado-Torres, Leonardo, Abhinav Nellore, Kai Kammers, Shannon E. Ellis, Margaret A. Taub, Kasper D. Hansen, Andrew E. Jaffe, Ben Langmead, and Jeffrey T. Leek. <e2><80><9c>Reproducible RNA-Seq Analysis Using Recount2.<e2><80><9d> Nature Biotechnology 35, no. 4 (April 2017): 319<e2><80><93>21. https://doi.org/10.1038/nbt.3838.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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