getIntactMatchInfo: Retrieve IntAct match info from the 'Entry' node of the Enfin...
In ENVISIONQuery: Retrieval from the ENVISION bioinformatics data portal into R
Description
Usage
Arguments
Value
Author(s)
Description
Retrieve IntAct match info from the 'Entry' node of the Enfin xml document.
Usage
1
2
getIntactMatchInfo(entry, positiveResultIDs,
participant.keyword="participant", primary.ref.keyword="xrefs")
Arguments
entry
The 'Entry' node of the Enfin xml document.
positiveResultIDs
Set of 'ID' nodes of the Enfin xml document which contain the pair match information.
participant.keyword
The keyword identifying the match related information within the match top node.
Default is "participant".
primary.ref.keyword
The keyword identifying the IntAct ID related information. Default is 'xrefs'.
Value
The array consisting of three columns, the first containing the source ID set,
and the second containing the ID set the source IDs are interacting with and the thirfd containing IntAct interaction ID.
Author(s)
Alex Lisovich, Roger Day
ENVISIONQuery documentation built on Nov. 8, 2020, 5:25 p.m.
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Description Usage Arguments Value Author(s)
Description
Retrieve IntAct match info from the 'Entry' node of the Enfin xml document.
Usage
1 2 | getIntactMatchInfo(entry, positiveResultIDs,
participant.keyword="participant", primary.ref.keyword="xrefs")
|
Arguments
entry |
The 'Entry' node of the Enfin xml document. |
positiveResultIDs |
Set of 'ID' nodes of the Enfin xml document which contain the pair match information. |
participant.keyword |
The keyword identifying the match related information within the match top node. Default is "participant". |
primary.ref.keyword |
The keyword identifying the IntAct ID related information. Default is 'xrefs'. |
Value
The array consisting of three columns, the first containing the source ID set, and the second containing the ID set the source IDs are interacting with and the thirfd containing IntAct interaction ID.
Author(s)
Alex Lisovich, Roger Day
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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