Files in ENCODExplorer

A compilation of ENCODE metadata

README.md R/ENCODESummary.R R/download.R R/summaryBuilders.R R/GenomicOverlaps.R R/shiny_encode.R R/prepare_data.R R/rest_api.R R/ENCODExplorer.R R/demo.R R/query.R R/createDesign.R R/fuzzySearch.R vignettes/ENCODExplorer.Rmd man/queryExpressionGeneric.Rd man/ENCODExplorer.Rd man/queryTranscriptExpression.Rd man/names-GenomicOverlaps-method.Rd man/initial_regions-GenomicOverlaps-method.Rd man/intersect_regions.Rd man/queryConsensusPeaks.Rd man/consensus_indices.Rd man/searchEncode.Rd man/shinyEncode.Rd man/ENCODESummary-class.Rd man/queryGeneExpression.Rd man/combined_regions-GenomicOverlaps-method.Rd man/union_regions.Rd man/combined_regions-set-GenomicOverlaps-GRanges-method.Rd man/fuzzySearch.Rd man/pairwise_overlap.Rd man/queryEncodeGeneric.Rd man/buildExpressionSummary.Rd man/createDesign.Rd man/download_dt_file.Rd man/buildConsensusPeaks.Rd man/get_encode_df.Rd man/intersect_indices.Rd man/consensus_regions.Rd man/queryEncode.Rd man/GenomicOverlaps.Rd man/ENCODEBindingConsensus-class.Rd man/union_indices.Rd man/names-set-GenomicOverlaps-character-method.Rd man/split_by_metadata.Rd man/ENCODEExpressionSummary-class.Rd man/length-GenomicOverlaps-method.Rd man/searchToquery.Rd man/get_encode_df_full.Rd man/get_encode_df_demo.Rd man/download_single_file.Rd man/intersect_matrix.Rd man/choose_interactive_value.Rd man/GenomicOverlaps-class.Rd man/downloadEncode.Rd tests/runTests.R inst/doc/ENCODExplorer.Rmd inst/doc/ENCODExplorer.R inst/shiny/ui.R inst/shiny/server.R inst/unitTests/local_test_query_transform.R inst/unitTests/local_test_getExperimentDetails.R inst/unitTests/test_query.R inst/unitTests/local_test_getFileId.R inst/unitTests/local_test_extract_table.R inst/unitTests/test_createDesign.R inst/unitTests/test_search.R inst/unitTests/local_test_getFileDetails.R inst/unitTests/test_summary.R inst/unitTests/local_test_getDatasetDetails.R inst/unitTests/test_download.R inst/unitTests/test_fuzzySearch.R