IsoExampleList: Simulated isoform level data set with 5 ordered conditions

In EBSeqHMM: Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments

Description

'IsoExampleList' gives the isoform level simulated data with 5 ordered conditions, triplicates for each condition. The data set was simulated following the Negative Binomial distribution. The parameters of each isoform (mean and overdispersion) were sampled from the isoform level empirical estimates from an empirical RNA-Seq data set from Thomson lab at Morgridge Institute for Research.

Format

IsoExampleList is a list with three components. IsoExampleList$IsoExampleData contains a matrix with 200 isoform (rows) and 15 samples (columns). IsoExampleList$IsoNames contains a vector of isoform names. IsoformExampleList$IsosGeneNames contains a vector indicating the gene each isoform belongs to.

See Also

GeneExampleData

Examples

data(IsoExampleList)
str(IsoExampleList)

EBSeqHMM documentation built on Nov. 8, 2020, 5:22 p.m.