intermediateMat: Find the clustering matrix that we would get if we stopped...

In Dune: Improving replicability in single-cell RNA-Seq cell type discovery

Description

Find the clustering matrix that we would get if we stopped the ARI merging early

Usage

intermediateMat(merger, p = 1, n_steps = NULL)

Arguments

merger	the result from having run Dune on the dataset
p	A value between 0 and 1. We stop when the mean ARI has improved by p of the final total improvement. Default to 1 (i.e running the full merging).
n_steps	Alternatively, you can specifiy the number of merging steps to do before stopping.

Value

A matrix with the same dimensions as the currentmMat of the merger argument

Examples

data("clusMat", package = "Dune")
merger <- Dune(clusMat = clusMat)
head(intermediateMat(merger, n_steps = 1))

Dune documentation built on Nov. 8, 2020, 7:55 p.m.