DMResults-class: Initial storage object for called DMRs - class

In DMRcate: Methylation array and sequencing spatial analysis methods

Description

An S4 class that stores DMR information as output from dmrcate.

Slots

This class has eight slots, summarising DMR information to be passed to extractRanges:

coord:

DMR coordinates in UCSC style.

no.cpgs:

Number of constituent CpG sites of DMR.

min_smoothed_fdr:

Minimum FDR of the smoothed estimate.

Stouffer:

Stouffer summary transform of the individual CpG FDRs.

HMFDR:

Harmonic mean of the individual CpG FDRs.

Fisher:

Fisher combined probability transform of the individual CpG FDRs.

maxdiff:

Maximum differential/coefficient within the DMR.

meandiff:

Mean differential/coefficient across the DMR.

Methods

DMResults objects have a show method describing the number of DMRs called.

Author(s)

Tim Peters <[e-mail]>

DMRcate documentation built on Jan. 17, 2021, 2 a.m.