writeTables: Writes the output table post-alignment

In DIAlignR: Dynamic Programming Based Alignment of MS2 Chromatograms

Description

Selects all features from multipeptide with alignment rank = 1, and write them onto the disk.

Usage

writeTables(filename, fileInfo, multipeptide, precursors)

Arguments

filename	(string) Name of the output file.
fileInfo	(data-frame) Output of getRunNames function.
multipeptide	(list of data-frames) Each element of the list is collection of features associated with a precursor.
precursors	(data-frame) for each transition_group_id, contains peptide sequence and charge.

Value

An output table with following columns: precursor, run, intensity, RT, leftWidth, rightWidth, peak_group_rank, m_score, alignment_rank, peptide_id, sequence, charge, group_label.

Author(s)

Shubham Gupta, [e-mail]

ORCID: 0000-0003-3500-8152

License: (c) Author (2020) + GPL-3 Date: 2020-04-14

See Also

getRunNames, getMultipeptide, getPrecursors

Examples

data(oswFiles_DIAlignR, package="DIAlignR")
## Not run: 
writeTables("DIAlignR.csv", fileInfo, multipeptide, precursors)

## End(Not run)

DIAlignR documentation built on Nov. 8, 2020, 8:22 p.m.