convert_Yeast_SGDId_2_systematic: converts the SGD Gene Id into the systematic name of the gene

In ClusterJudge: Judging Quality of Clustering Methods using Mutual Information

Description

converts the Saccharomyces Genome Database (SGD) Gene Id into the systematic name of the gene

Usage

convert_Yeast_SGDId_2_systematic(SGD.Ids = c("S000007287", "S000007287", "S000007287"))

Arguments

SGD.Ids

a vector of characters. Each element is a string representing a gene.

Value

a matrix of characters containing the input SGD gene Ids as first column and the corresponding Yeast systematic gene names as seccond column.

Note

it requires online access to http://llama.mshri.on.ca/cgi/synergizer/serv where the conversion is performed.

It uses the httr and jsonlite R packages.

Author(s)

Adrian Pasculescu

References

Yeast - Systematic Names Assignment in http://www.yeastgenome.org/help/community

GF Berriz and FP Roth. The Synergizer service for translating gene, protein, and other biological identifiers. Bioinformatics 24(19)-2272 (2008).

Examples

converted.genes <- convert_Yeast_SGDId_2_systematic(
                   SGD.Ids = c("S000007287", "S000007287", "S000007287"))

str(converted.genes)

ClusterJudge documentation built on March 11, 2021, 2 a.m.