subsample_scExp: Subsample scExp
In ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

Description Usage Arguments Value Examples

View source: R/preprocessing_filtering_reduction.R

Randomly sample x cells from each sample in a SingleCellExperiment to return a subsampled SingleCellExperiment with all samples having maximum n cells. If n is higher than the number of cell in a sample, this sample will not be subsampled.

1	subsample_scExp(scExp, n_cells = 500)

`scExp`	A SingleCellExperiment
`n_cells`	An integer number of cells to subsample for each sample (500)

A subsampled SingleCellExperiment

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scExp = create_scExp(create_scDataset_raw()$mat,create_scDataset_raw()$annot)
scExp_sub = subsample_scExp(scExp,50)
## Not run: num_cell_scExp(scExp_sub)