getTagMatrix: getTagMatrix
In ChIPseeker: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
Description
Usage
Arguments
Value
Description
calculate the tag matrix
Usage
1
getTagMatrix(peak, weightCol = NULL, windows, flip_minor_strand = TRUE)
Arguments
peak
peak file or GRanges object
weightCol
column name of weight, default is NULL
windows
a collection of region with equal size, eg. promoter region.
flip_minor_strand
whether flip the orientation of minor strand
Value
tagMatrix
ChIPseeker documentation built on March 6, 2021, 2 a.m.
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Description Usage Arguments Value
Description
calculate the tag matrix
Usage
1 | getTagMatrix(peak, weightCol = NULL, windows, flip_minor_strand = TRUE)
|
Arguments
peak |
peak file or GRanges object |
weightCol |
column name of weight, default is NULL |
windows |
a collection of region with equal size, eg. promoter region. |
flip_minor_strand |
whether flip the orientation of minor strand |
Value
tagMatrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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