myPeakList: An example GRanges object representing a ChIP-seq peak...

In ChIPpeakAnno: Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges

Description

the putative STAT1-binding regions identified in un-stimulated cells using ChIP-seq technology (Robertson et al., 2007)

Usage

myPeakList

Format

GRanges with slot rownames containing the ID of peak as character, slot start containing the start position of the peak, slot end containing the end position of the peak and seqnames containing the chromosome where the peak is located.

Source

Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, et al. (2007) Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nat Methods 4:651-7

Examples

data(myPeakList)
slotNames(myPeakList)

ChIPpeakAnno documentation built on April 1, 2021, 6:01 p.m.