TSS.human.GRCh37: TSS annotation for human sapiens (GRCh37) obtained from...
In ChIPpeakAnno: Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Description
Usage
Format
Details
Examples
Description
TSS annotation for human sapiens (GRCh37) obtained from biomaRt
Usage
1
Format
A GRanges object with slot start holding the start position of the
gene, slot end holding the end position of the gene, slot names holding
ensembl gene id, slot seqnames holding the chromosome location where the
gene is located and slot strand holding the strinad information. In
addition, the following variables are included.
- list("description")
description of the gene
Details
The dataset TSS.human.GRCh37 was obtained by:
mart = useMart(biomart = "ENSEMBL_MART_ENSEMBL", host="grch37.ensembl.org",
path="/biomart/martservice", dataset = "hsapiens_gene_ensembl")
getAnnotation(mart, featureType = "TSS")
Examples
1
2
ChIPpeakAnno documentation built on April 1, 2021, 6:01 p.m.
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Description Usage Format Details Examples
Description
TSS annotation for human sapiens (GRCh37) obtained from biomaRt
Usage
1 |
Format
A GRanges object with slot start holding the start position of the gene, slot end holding the end position of the gene, slot names holding ensembl gene id, slot seqnames holding the chromosome location where the gene is located and slot strand holding the strinad information. In addition, the following variables are included.
- list("description")
description of the gene
Details
The dataset TSS.human.GRCh37 was obtained by:
mart = useMart(biomart = "ENSEMBL_MART_ENSEMBL", host="grch37.ensembl.org", path="/biomart/martservice", dataset = "hsapiens_gene_ensembl")
getAnnotation(mart, featureType = "TSS")
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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