Files in CancerInSilico
An R interface for computational modeling of tumor progression
README.md
CancerInSilico documentation built on Nov. 8, 2020, 6:32 p.m.
NAMESPACE
DESCRIPTION
build/vignette.rds
src/RcppExports.cpp
src/RunModel.cpp
src/Makevars
src/test-runner.cpp
src/CellModels/DrasdoHohmeModel.cpp
src/CellModels/DrasdoHohmeModel.h
src/Core/Random.h
src/Core/Point.h
src/Core/CellPhase.h
src/Core/CellType.h
src/Core/Drug.h
src/Core/CellBasedModel.h
src/Core/CellType.cpp
src/Core/Random.cpp
src/Core/Cell.h
src/Core/CellBasedModel.cpp
src/Core/SquareLattice.h
src/Core/Lattice.h
src/Core/Drug.cpp
src/Core/Cell.cpp
src/Tests/catch.h
src/Tests/CellModels/test-DrasdoHohme.cpp
src/Tests/Core/test-Drug.cpp
src/Tests/Core/test-SquareLattice.cpp
src/Tests/Core/test-CellType.cpp
src/Tests/Core/test-Random.cpp
src/Tests/Core/test-Point.cpp
src/Tests/OffLatticeModel/test-OffLatticeRadiusSolver.cpp
src/Tests/OffLatticeModel/test-OffLatticeCell.cpp
src/OffLatticeModel/OffLatticeCellBasedModel.h
src/OffLatticeModel/OffLatticeRadiusSolver.h
src/OffLatticeModel/OffLatticeCell.cpp
src/OffLatticeModel/OffLatticeRadiusSolver.cpp
src/OffLatticeModel/OffLatticeCellBasedModel.cpp
src/OffLatticeModel/OffLatticeCell.h
data/ReferenceGeneExpression.RData
data/datalist
data/SampleModels.RData
data/SamplePathways.RData
R/class-Pathway.R
R/class-DrasdoHohmeModel.R
R/RcppExports.R
R/GeneExpressionSimulation.R
R/class-OffLatticeModel.R
R/class-CellType.R
R/documentation.R
R/class-GeneExpressionParams.R
R/class-Drug.R
R/CellSimulation.R
R/class-CellModel.R
vignettes/References.bib
vignettes/CancerInSilico.Rmd
man/modLongRun.Rd
man/pwyMitosis.Rd
man/getCellPhase-methods.Rd
man/getNumberOfCells-methods.Rd
man/inSilicoGeneExpression.Rd
man/modCellTypes.Rd
man/initialize-CellModel-method.Rd
man/getAxisAngle-methods.Rd
man/CancerInSilico.Rd
man/OffLatticeModel-class.Rd
man/getDensity-methods.Rd
man/simulateWithLimmaVoom.Rd
man/getCellDistance-methods.Rd
man/modDefault.Rd
man/getAxisLength-methods.Rd
man/inSilicoPathways.Rd
man/CellType-class.Rd
man/getRadius-methods.Rd
man/modLargeRun.Rd
man/getCellType-methods.Rd
man/calibratePathway.Rd
man/modHighDensity.Rd
man/voomErrorModel.Rd
man/combineGeneExpression.Rd
man/interactivePlot-methods.Rd
man/Drug-class.Rd
man/plotCells-methods.Rd
man/simulateWithSplatter.Rd
man/simulateMicroArray.Rd
man/getCycleLength-methods.Rd
man/CellModel-class.Rd
man/pwyContactInhibition.Rd
man/checkDataSet.Rd
man/getLocalDensity-methods.Rd
man/run-methods.Rd
man/cellSummary-methods.Rd
man/modDrugs.Rd
man/getTrialAcceptRate-methods.Rd
man/Pathway-class.Rd
man/getCoordinates-methods.Rd
man/simulatePathwayActivity.Rd
man/pwyGrowth.Rd
man/inSilicoCellModel.Rd
man/initialize-OffLatticeModel-method.Rd
man/initialize-DrasdoHohmeModel-method.Rd
man/getMeanExp.Rd
man/referenceGeneExpression.Rd
man/pwySPhase.Rd
man/GeneExpressionParams-class.Rd
man/DrasdoHohmeModel-class.Rd
tests/testthat.R
tests/testthat/test-RunCellSimulation.R
tests/testthat/test-CreateCellModel.R
tests/testthat/test-PathwayClass.R
tests/testthat/test-GeneExpressionSimulation.R
tests/testthat/test-cpp.R
tests/testthat/test-AccessCellModel.R
inst/NEWS
inst/doc/CancerInSilico.R
inst/doc/CancerInSilico.Rmd
inst/doc/CancerInSilico.html
