queryCNEData: Query the CNEData package to fetch the CNEs

In CNEr: CNE Detection and Visualization

Description

Query the CNEData package to fetch the CNEs based on target, query species, winSize and identity.

Usage

  queryCNEData(dbName, target, query, winSize, identity,
               type=c("target", "all"))

Arguments

dbName	The path of SQLite database.
target, query	The CNEs between target and query species.
winSize, identity	The thresholds of CNEs to fetch on identity over winSize.
type	Which set of CNEs are returned. When it is "all", the CNEs of target always on the left side of returned data.frame.

Value

A data.frame of CNEs coordinates in chr, start, end.

Author(s)

Ge Tan

CNEr documentation built on Nov. 8, 2020, 5:36 p.m.