Man pages for CINdex
Chromosome Instability Index
| clin.crc | Colon cancer clinical dataset |
| cnvgr.18.auto | Probe annotation file for Affymetrix Genome Wide Human SNP... |
| comp.heatmap | A comprehensive heatmap function that plots Chromosome and... |
| cytobands.cin | Cytoband CIN dataset |
| cyto.cin4heatmap | Cytoband CIN T-test output |
| extract.genes.in.cyto.regions | Given an input of cytobands, it outputs a list of genes that... |
| geneAnno | CDS gene annotation file |
| grl.data | Output of segmentation algorithm |
| hg18.ucsctrack | Human reference annotation file |
| run.cin.chr | Calculate chromosome CIN |
| run.cin.cyto | Calculate cytoband CIN |
| snpgr.18.auto | Probe annotation file for Affymetrix Genome Wide Human SNP... |
| ttest.cyto.cin.heatmap | Performs T test on cytoband level CIN data, and plots heatmap |
