R/00xsAnnotate.R

In CAMERA: Collection of annotation related methods for mass spectrometry data

###Constructor###
setClass("xsAnnotate",
    representation(
                    groupInfo = "matrix" ,
                    pspectra = "list",
                    psSamples="numeric",
                    isotopes="list",
                    derivativeIons="list",
                    formula="list",
                    sample="numeric",
                    xcmsSet="xcmsSet",
                    ruleset="data.frame",
                    annoID="matrix",
                    annoGrp="matrix",
                    isoID="matrix",
                    polarity="character",
                    runParallel="list"),
         contains=c("Versioned"),
    prototype(
                    groupInfo= matrix(ncol=0,nrow=0),
                    pspectra = list(),
                    psSamples=NULL,
                    isotopes=list(),
                    derivativeIons=list(),
                    formula=list(),
                    sample=NULL,
                    xcmsSet=NULL,
                    ruleset=NULL,
                    annoID=matrix(ncol=4, nrow=0),
                    annoGrp=matrix(ncol=4, nrow=0),
                    isoID=matrix(ncol=4, nrow=0),
                    polarity="",
                    runParallel=NULL,
                    new("Versioned", versions=c(CAMERA="1.13.333")))
            );