summaryQC: Method summaryQC
In BaalChIP: BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes

Method summaryQC

Generates summary of QC result.

summaryQC(.Object)

## S4 method for signature 'BaalChIP'
summaryQC(.Object)

.Object

An object of the BaalChIP class.

A list with two elements:

filtering_stats containing the number of variants that were filtered out in each filter category and the total number that 'pass' all filters.
average_stats containing the average number and average percentage of variants in each filter category, averaged across all analysed groups.

Ines de Santiago

1 2	data('BaalObject') summaryQC(BaalObject)

BaalChIP documentation built on Nov. 8, 2020, 5:23 p.m.

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