as.data.frame-methods: Converting BASiCS results objects to data.frames

In BASiCS: Bayesian Analysis of Single-Cell Sequencing data

Description

Converting BASiCS results objects to data.frames

Usage

## S4 method for signature 'BASiCS_ResultsDE'
as.data.frame(x, Parameter, Filter = TRUE, ProbThreshold = NULL)

## S4 method for signature 'BASiCS_ResultDE'
as.data.frame(x, Filter = TRUE, ProbThreshold = NULL)

## S4 method for signature 'BASiCS_ResultVG'
as.data.frame(x, Filter = TRUE, ProbThreshold = NULL)

Arguments

x	An object of class BASiCS_ResultVG, BASiCS_ResultDE, or BASiCS_ResultsDE.
Parameter	For BASiCS_ResultsDE objects only. Character scalar specifying which table of results to output. Available options are "Mean", (mu, mean expression), "Disp" (delta, overdispersion) and "ResDisp" (epsilon, residual overdispersion).
Filter	Logical scalar. If TRUE, output only entries corresponding to genes that pass the decision rule used in the probabilistic test.
ProbThreshold	Only used if Filter=TRUE. Numeric scalar specifying the probability threshold to be used when filtering genes. Default is to use the threshold used in the original decision rule when the test was performed.

Value

A data.frame of test results.

BASiCS documentation built on April 16, 2021, 6 p.m.