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inst/Examples/Readme.md
In Thresher: Threshing and Reaping for Principal Components
author: Kevin R. Coombes and Min Wang
title: Code used for analyses in Thresher manuscript
date: 2017-12-08
Overview
This folder contains the R code used to perform simulation and to
analyze breast cancer data sets in our paper titled Thresher:
Determining the Number of Clusters while Removing Outliers and
published in ther jouirnal BMC Bioinformatics.
ExistingMethods
This subfolder contains scripts (and not packages) needed to implement
the existing methods we use for comparison. In particular, we needed
to make minor changes to the main NbClust driver function, since the
version in the package rather impolitely overwrites the seed for the
random number generator, thus breaking our simulation code.
Simulations
This subfolder contains the code that performs the simulations
described in Section 3 of the manuscript.
BRCA
This subfoilder contains the code to analyze GEO breast cancer data
sets, as described in Section 4 of the manuscript.
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Thresher documentation built on April 27, 2024, 3 a.m.
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author: Kevin R. Coombes and Min Wang title: Code used for analyses in Thresher manuscript date: 2017-12-08
Overview
This folder contains the R code used to perform simulation and to analyze breast cancer data sets in our paper titled Thresher: Determining the Number of Clusters while Removing Outliers and published in ther jouirnal BMC Bioinformatics.
ExistingMethods
This subfolder contains scripts (and not packages) needed to implement
the existing methods we use for comparison. In particular, we needed
to make minor changes to the main NbClust driver function, since the
version in the package rather impolitely overwrites the seed for the
random number generator, thus breaking our simulation code.
Simulations
This subfolder contains the code that performs the simulations described in Section 3 of the manuscript.
BRCA
This subfoilder contains the code to analyze GEO breast cancer data sets, as described in Section 4 of the manuscript.
Try the Thresher package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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