Nothing
.modelspecs <-
list(`<default>` = structure(list(model = "mean", item.name = NA_character_,
formula.arg = "formula"), row.names = c(NA, -1L), class = c("model.specs",
"data.frame"), object.info = c(package = "<default>", func = "<default>",
className = "<default>")), betareg = structure(list(model = c("mean",
"dispersion"), item.name = c("mean", "precision"), formula.arg = c("formula1",
"formula2")), row.names = c(NA, -2L), class = c("model.specs",
"data.frame"), object.info = c(package = "betareg", func = "betareg",
className = "betareg")), gamlss = structure(list(model = c("mean",
"dispersion", "power", "tau"), item.name = c("mu", "sigma", "nu",
"tau"), formula.arg = c("formula", "sigma.formula", "nu.formula",
"tau.formula")), row.names = c(NA, -4L), class = c("model.specs",
"data.frame"), object.info = c(package = "gamlss", func = "gamlss",
className = "gamlss")), glmmTMB = structure(list(model = c("mean",
"zeroinfl", "dispersion"), item.name = c("cond", "zi", "disp"
), formula.arg = c("formula", "ziformula", "dispformula")), row.names = c(NA,
-3L), class = c("model.specs", "data.frame"), object.info = c(package = "glmmTMB",
func = "glmmTMB", className = "glmmTMB")), glmerMod = structure(list(
model = "mean", item.name = NA_character_, formula.arg = "formula"), row.names = c(NA,
-1L), class = c("model.specs", "data.frame"), object.info = c(package = "lme4",
func = "glmer", className = "glmerMod")), lmerMod = structure(list(
model = "mean", item.name = NA_character_, formula.arg = "formula"), row.names = c(NA,
-1L), class = c("model.specs", "data.frame"), object.info = c(package = "lme4",
func = "lmer", className = "lmerMod")), gls = structure(list(
model = "mean", item.name = NA_character_, formula.arg = "model"), row.names = c(NA,
-1L), class = c("model.specs", "data.frame"), object.info = c(package = "nlme",
func = "gls", className = "gls")), lme = structure(list(model = "mean",
item.name = NA_character_, formula.arg = "fixed,random"), row.names = c(NA,
-1L), class = c("model.specs", "data.frame"), object.info = c(package = "nlme",
func = "lme", className = "lme")), nlme = structure(list(model = "mean",
item.name = NA_character_, formula.arg = "model,fixed,random"), row.names = c(NA,
-1L), class = c("model.specs", "data.frame"), object.info = c(package = "nlme",
func = "nlme", className = "nlme")), hurdle = structure(list(
model = c("mean", "zeroinfl"), item.name = c("count", "zero"
), formula.arg = c("formula1", "formula2")), row.names = c(NA,
-2L), class = c("model.specs", "data.frame"), object.info = c(package = "pscl",
func = "hurdle", className = "hurdle")), zeroinfl = structure(list(
model = c("mean", "zeroinfl"), item.name = c("count", "zero"
), formula.arg = c("formula1", "formula2")), row.names = c(NA,
-2L), class = c("model.specs", "data.frame"), object.info = c(package = "pscl",
func = "zeroinfl", className = "zeroinfl")), lm = structure(list(
model = "mean", item.name = NA_character_, formula.arg = "formula"), row.names = c(NA,
-1L), class = c("model.specs", "data.frame"), object.info = c(package = "stats",
func = "lm", className = "lm")), unmarked = list(unmarkedFitColExt = list(
colext = structure(list(model = c("initial occupancy", "colonization",
"extinction", "detection"), item.name = c("psi", "col", "ext",
"det"), formula.arg = c("psiformula", "gammaformula", "epsilonformula",
"pformula"), name = c("Initial", "Colonization", "Extinction",
"Detection"), short.name = c("psi", "col", "ext", "p"), formula.slot = c("psiformula",
"gamformula", "epsformula", "detformula"), formlist.name = c(NA_character_,
NA_character_, NA_character_, NA_character_), formula.slot2 = c("formula1",
"formula2", "formula3", "formula4"), data = structure(c(1L,
2L, 2L, 3L), levels = c("site", "site+year", "site+year+obs"
), class = "factor")), row.names = c(NA, -4L), class = c("model.specs",
"data.frame"), object.info = c(package = "unmarked", func = "colext",
className = "unmarkedFitColExt", fitType = "colext"))), unmarkedFitDS = list(
distsamp = structure(list(model = c("abundance", "detection",
"scale"), item.name = c("state", "det", "scale"), formula.arg = c("formula2",
"formula1", NA), name = c("Abundance|Density", "Detection",
"Hazard-rate(scale)"), short.name = c("lam", "p", "p"), formula.slot = c("formula2",
"formula1", NA), formlist.name = c(NA_character_, NA_character_,
NA_character_), formula.slot2 = c(NA_character_, NA_character_,
NA_character_), data = structure(c(1L, 2L, NA), levels = c("site",
"site+obs"), class = "factor")), row.names = c(NA, -3L), class = c("model.specs",
"data.frame"), object.info = c(package = "unmarked", func = "distsamp",
className = "unmarkedFitDS", fitType = "distsamp"))), unmarkedFitDSO = list(
distsampOpen = structure(list(model = c("abundance", "recruitment",
"recruitment", "growth", "growth", "growth", "survival",
"carrying capacity", "detection", "immigration", "scale",
"dispersion", "zeroinfl"), item.name = c("lambda", "gamma",
"gamma", "gamma", "gamma", "gamma", "omega", "omega", "det",
"iota", "scale", "alpha", "psi"), formula.arg = c("lambdaformula",
"gammaformula", "gammaformula", "gammaformula", "gammaformula",
"gammaformula", "omegaformula", "omegaformula", "pformula",
"iotaformula", NA, NA, NA), name = c("Abundance", "Recruitment",
"Recruitment", "Growth Rate", "Growth Rate", "Growth Rate",
"Apparent Survival", "Carrying Capacity", "Detection", "Immigration",
"Hazard-rate(scale)", "Dispersion", "Zero-inflation"), short.name = c("lam",
"gamConst", "gamAR", "gamTrend", "gamRicker", "gamGomp",
"omega", "omCarCap", "sigma", "iota", "scale", "alpha", "psi"
), formula.slot = c("formlist", "formlist", "formlist", "formlist",
"formlist", "formlist", "formlist", "formlist", "formlist",
"formlist", NA, NA, NA), formlist.name = c("lambdaformula",
"gammaformula", "gammaformula", "gammaformula", "gammaformula",
"gammaformula", "omegaformula", "omegaformula", "pformula",
"iotaformula", NA, NA, NA), formula.slot2 = c("formula1",
"formula2", "formula2", "formula2", "formula2", "formula2",
"formula3", "formula3", "formula4", "formula5", NA, NA, NA
), data = structure(c(1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
2L, NA, NA, NA), levels = c("site", "site+year"), class = "factor")), row.names = c(NA,
-13L), class = c("model.specs", "data.frame"), object.info = c(package = "unmarked",
func = "distsampOpen", className = "unmarkedFitDSO", fitType = "distsampOpen"
)), multmixOpen = structure(list(model = c("recruitment",
"recruitment", "growth", "growth", "growth"), item.name = c("gamma",
"gamma", "gamma", "gamma", "gamma"), formula.arg = c("gammaformula",
"gammaformula", "gammaformula", "gammaformula", "gammaformula"
), name = c("Recruitment", "Recruitment", "Growth Rate",
"Growth Rate", "Growth Rate"), short.name = c("gamConst",
"gamAR", "gamTrend", "gamRicker", "gamGomp"), formula.slot = c("formlist",
"formlist", "formlist", "formlist", "formlist"), formlist.name = c("gammaformula",
"gammaformula", "gammaformula", "gammaformula", "gammaformula"
), formula.slot2 = c("formula2", "formula2", "formula2",
"formula2", "formula2"), data = structure(c(1L, 1L, 1L, 1L,
1L), levels = "site+year", class = "factor")), row.names = c(NA,
-5L), class = c("model.specs", "data.frame"), object.info = c(package = "unmarked",
func = "multmixOpen", className = "unmarkedFitDSO", fitType = "multmixOpen"
))), unmarkedFitGDR = list(gdistremoval = structure(list(
model = c("abundance", "dispersion", "availability", "distance",
"scale", "removal"), item.name = c("lambda", "alpha", "phi",
"dist", "scale", "rem"), formula.arg = c("lambdaformula",
NA, "phiformula", "distanceformula", NA, "removalformula"
), name = c("Abundance", "Dispersion", "Availability", "Distance",
"Hazard-rate (scale)", "Removal"), short.name = c("lambda",
"alpha", "phi", "dist", "scale", "rem"), formula.slot = c("formlist",
NA, "formlist", "formlist", NA, "formlist"), formlist.name = c("lambdaformula",
NA, "phiformula", "distanceformula", NA, "removalformula"
), formula.slot2 = c("formula1", NA, "formula2", "formula3",
NA, "formula4"), data = structure(c(1L, NA, 2L, 2L, NA, 3L
), levels = c("site", "site+year", "site+year+obs"), class = "factor")), row.names = c(NA,
-6L), class = c("model.specs", "data.frame"), object.info = c(package = "unmarked",
func = "gdistremoval", className = "unmarkedFitGDR", fitType = "gdistremoval"
))), unmarkedFitGDS = list(gdistsamp = structure(list(model = c("abundance",
"availability", "detection", "scale", "dispersion", "zeroinfl"
), item.name = c("lambda", "phi", "det", "scale", "alpha", "psi"
), formula.arg = c("lambdaformula", "phiformula", "pformula",
NA, NA, NA), name = c("Abundance", "Availability", "Detection",
"Hazard-rate(scale)", "Dispersion", "Zero-inflation"), short.name = c("lambda",
"phi", "p", "scale", "alpha", "psi"), formula.slot = c("formlist",
"formlist", "formlist", NA, NA, NA), formlist.name = c("lambdaformula",
"phiformula", "pformula", NA, NA, NA), formula.slot2 = c("formula1",
"formula2", "formula3", NA, NA, NA), data = structure(c(1L, 2L,
3L, NA, NA, NA), levels = c("site", "site+year", "site+year+obs"
), class = "factor")), row.names = c(NA, -6L), class = c("model.specs",
"data.frame"), object.info = c(package = "unmarked", func = "gdistsamp",
className = "unmarkedFitGDS", fitType = "gdistsamp"))), unmarkedFitGMM = list(
gmn = structure(list(model = c("abundance", "availability",
"detection", "dispersion", "zeroinfl"), item.name = c("lambda",
"phi", "det", "alpha", "psi"), formula.arg = c("lambdaformula",
"phiformula", "pformula", NA, NA), name = c("Abundance",
"Availability", "Detection", "Dispersion", "Zero-inflation"
), short.name = c("lambda", "phi", "p", "alpha", "psi"),
formula.slot = c("formlist", "formlist", "formlist",
NA, NA), formlist.name = c("lambdaformula", "phiformula",
"pformula", NA, NA), formula.slot2 = c("formula", "formula",
"formula", NA, NA), data = structure(c(1L, 2L, 3L, NA,
NA), levels = c("site", "site+year", "site+year+obs"), class = "factor")), row.names = c(NA,
-5L), class = c("model.specs", "data.frame"), object.info = c(package = "unmarked",
func = "gmultmix", className = "unmarkedFitGMM", fitType = "gmn"
))), unmarkedFitGOccu = list(goccu = structure(list(model = c("occupancy",
"availability", "detection"), item.name = c("psi", "phi", "det"
), formula.arg = c("psiformula", "phiformula", "pformula"), name = c("Occupancy",
"Availability", "Detection"), short.name = c("psi", "phi", "p"
), formula.slot = c("formlist", "formlist", "formlist"), formlist.name = c("psiformula",
"phi", "pformula"), formula.slot2 = c("formula", "formula", "formula"
), data = structure(1:3, levels = c("site", "site+year", "site+year+obs"
), class = "factor")), row.names = c(NA, -3L), class = c("model.specs",
"data.frame"), object.info = c(package = "unmarked", func = "goccu",
className = "unmarkedFitGOccu", fitType = "goccu"))), unmarkedFitGPC = list(
gpcount = structure(list(model = c("abundance", "availability",
"detection", "dispersion", "zeroinfl"), item.name = c("lambda",
"phi", "det", "alpha", "psi"), formula.arg = c("lambdaformula",
"phiformula", "pformula", NA, NA), name = c("Abundance",
"Availability", "Detection", "Dispersion", "Zero-inflation"
), short.name = c("lambda", "phi", "p", "alpha", "psi"),
formula.slot = c("formlist", "formlist", "formlist",
NA, NA), formlist.name = c("lambdaformula", "phiformula",
"pformula", NA, NA), formula.slot2 = c("formula", "formula",
"formula", NA, NA), data = structure(c(1L, 2L, 3L, NA,
NA), levels = c("site", "site+year", "site+year+obs"), class = "factor")), row.names = c(NA,
-5L), class = c("model.specs", "data.frame"), object.info = c(package = "unmarked",
func = "gpcount", className = "unmarkedFitGPC", fitType = "gpcount"
))), unmarkedFitMMO = list(multmixOpen = structure(list(model = c("abundance",
"survival", "carrying capacity", "detection", "immigration",
"dispersion", "zeroinfl"), item.name = c("lambda", "omega", "omega",
"det", "iota", "alpha", "psi"), formula.arg = c("lambdaformula",
"omegaformula", "omegaformula", "pformula", "iotaformula", NA,
NA), name = c("Abundance", "Apparent Survival", "Carrying Capacity",
"Detection", "Immigration", "Dispersion", "Zero-inflation"),
short.name = c("lam", "omega", "omCarCap", "p", "iota", "alpha",
"psi"), formula.slot = c("formlist", "formlist", "formlist",
"formlist", "formlist", NA, NA), formlist.name = c("lambdaformula",
"omegaformula", "omegaformula", "pformula", "iotaformula",
NA, NA), formula.slot2 = c("formula1", "formula3", "formula3",
"formula4", "formula5", NA, NA), data = structure(c(1L, 2L,
2L, 3L, 2L, NA, NA), levels = c("site", "site+year", "site+year+obs"
), class = "factor")), row.names = c(NA, -7L), class = c("model.specs",
"data.frame"), object.info = c(package = "unmarked", func = "multmixOpen",
className = "unmarkedFitMMO", fitType = "multmixOpen"))), unmarkedFitMPois = list(
multinomPois = structure(list(model = c("abundance", "detection"
), item.name = c("state", "det"), formula.arg = c("formula2",
"formula1"), name = c("Abundance", "Detection"), short.name = c("lambda",
"p"), formula.slot = c("formula2", "formula1"), formlist.name = c(NA_character_,
NA_character_), formula.slot2 = c(NA_character_, NA_character_
), data = structure(1:2, levels = c("site", "site+obs"), class = "factor")), row.names = c(NA,
-2L), class = c("model.specs", "data.frame"), object.info = c(package = "unmarked",
func = "multinomPois", className = "unmarkedFitMPois", fitType = "multinomPois"
))), unmarkedFitNmixTTD = list(nmixTTD = structure(list(model = c("abundance",
"detection", "dispersion", "shape"), item.name = c("state", "det",
"alpha", "shape"), formula.arg = c("stateformula", "detformula",
NA, NA), name = c("Abundance", "Detection", "Dispersion", "Weibull shape"
), short.name = c("lamN", "lamP", "alpha", "k"), formula.slot = c("stateformula",
"detformula", NA, NA), formlist.name = c(NA_character_, NA_character_,
NA_character_, NA_character_), formula.slot2 = c("formula2",
"formula1", NA, NA), data = structure(c(1L, 2L, NA, NA), levels = c("site",
"site+year+obs"), class = "factor")), row.names = c(NA, -4L), class = c("model.specs",
"data.frame"), object.info = c(package = "unmarked", func = "nmixTTD",
className = "unmarkedFitNmixTTD", fitType = "nmixTTD"))), unmarkedFitOccu = list(
occu = structure(list(model = c("occupancy", "detection"),
item.name = c("state", "det"), formula.arg = c("formula2",
"formula1"), name = c("Occupancy", "Detection"), short.name = c("psi",
"p"), formula.slot = c("formula2", "formula1"), formlist.name = c(NA_character_,
NA_character_), formula.slot2 = c(NA_character_, NA_character_
), data = structure(1:2, levels = c("site", "site+obs"
), class = "factor")), row.names = c(NA, -2L), class = c("model.specs",
"data.frame"), object.info = c(package = "unmarked", func = "occu",
className = "unmarkedFitOccu", fitType = "occu"))), unmarkedFitOccuCOP = list(
occuCOP = structure(list(model = c("occupancy", "detection rate"
), item.name = c("psi", "lambda"), formula.arg = c("psiformula",
"lambdaformula"), name = c("Occupancy probability", "Detection rate"
), short.name = c("psi", "lambda"), formula.slot = c("formlist",
"formlist"), formlist.name = c("psiformula", "lambdaformula"
), formula.slot2 = c("formula", "formula"), data = structure(1:2, levels = c("site",
"site+obs"), class = "factor")), row.names = c(NA, -2L), class = c("model.specs",
"data.frame"), object.info = c(package = "unmarked", func = "occuCOP",
className = "unmarkedFitOccuCOP", fitType = "occuCOP"))),
unmarkedFitOccuFP = list(occuFP = structure(list(model = c("occupancy",
"detection", "false positive", "certainity"), item.name = c("state",
"det", "fp", "b"), formula.arg = c("stateformula", "detformula",
"Fpformula", "Bformula"), name = c("Occupancy", "Detection",
"false positive", "Pcertain"), short.name = c("psi", "p",
"fp", "b"), formula.slot = c("stateformula", "detformula",
"FPformula", "Bformula"), formlist.name = c(NA_character_,
NA_character_, NA_character_, NA_character_), formula.slot2 = c("formula",
"formula", "formula", "formula"), data = structure(c(1L,
2L, 2L, 2L), levels = c("site", "site+obs"), class = "factor")), row.names = c(NA,
-4L), class = c("model.specs", "data.frame"), object.info = c(package = "unmarked",
func = "occuFP", className = "unmarkedFitOccuFP", fitType = "occuFP"
))), unmarkedFitOccuMS = list(occuMS = structure(list(model = c("occupancy",
"initial occupancy", "detection", "transition"), item.name = c("state",
"state", "det", "transition"), formula.arg = c("psiformulas",
"psiformulas", "phiformulas", "detformulas"), name = c("Occupancy",
"Initial Occupancy", "Detection", "Transition Probabilities"
), short.name = c("psi", "psi", "p", "phi"), formula.slot = c("formula",
"formula", "formula", "formula"), formlist.name = c(NA_character_,
NA_character_, NA_character_, NA_character_), formula.slot2 = c(NA_character_,
NA_character_, NA_character_, NA_character_), data = structure(c(1L,
1L, 2L, 2L), levels = c("site", "site+year+obs"), class = "factor")), row.names = c(NA,
-4L), class = c("model.specs", "data.frame"), object.info = c(package = "unmarked",
func = "occuMS", className = "unmarkedFitOccuMS", fitType = "occuMS"
))), unmarkedFitOccuMulti = list(occuMulti = structure(list(
model = c("occupancy", "detection"), item.name = c("state",
"det"), formula.arg = c("stateformulas", "detformulas"
), name = c("Occupancy", "Detection"), short.name = c("psi",
"p"), formula.slot = c("formula", "formula"), formlist.name = c(NA_character_,
NA_character_), formula.slot2 = c(NA_character_, NA_character_
), data = structure(1:2, levels = c("site", "site+obs"
), class = "factor")), row.names = c(NA, -2L), class = c("model.specs",
"data.frame"), object.info = c(package = "unmarked", func = "occuMulti",
className = "unmarkedFitOccuMulti", fitType = "occuMulti"
))), unmarkedFitOccuPEN = list(occu = structure(list(model = c("occupancy",
"detection"), item.name = c("state", "det"), formula.arg = c("formula2",
"formula1"), name = c("Occupancy", "Detection"), short.name = c("psi",
"p"), formula.slot = c("formula2", "formula1"), formlist.name = c(NA_character_,
NA_character_), formula.slot2 = c(NA_character_, NA_character_
), data = structure(1:2, levels = c("site", "site+obs"), class = "factor")), row.names = c(NA,
-2L), class = c("model.specs", "data.frame"), object.info = c(package = "unmarked",
func = "occuPEN", className = "unmarkedFitOccuPEN", fitType = "occu"
))), unmarkedFitOccuPEN_CV = list(occu = structure(list(model = c("occupancy",
"detection"), item.name = c("state", "det"), formula.arg = c("formula2",
"formula1"), name = c("Occupancy", "Detection"), short.name = c("psi",
"p"), formula.slot = c("formula2", "formula1"), formlist.name = c(NA_character_,
NA_character_), formula.slot2 = c(NA_character_, NA_character_
), data = structure(1:2, levels = c("site", "site+obs"), class = "factor")), row.names = c(NA,
-2L), class = c("model.specs", "data.frame"), object.info = c(package = "unmarked",
func = "occuPEN_CV", className = "unmarkedFitOccuPEN_CV",
fitType = "occu"))), unmarkedFitOccuRN = list(occuRN = structure(list(
model = c("abundance", "detection"), item.name = c("state",
"det"), formula.arg = c("formula2", "formula1"), name = c("Abundance",
"Detection"), short.name = c("lam", "p"), formula.slot = c("formula2",
"formula1"), formlist.name = c(NA_character_, NA_character_
), formula.slot2 = c(NA_character_, NA_character_), data = structure(1:2, levels = c("site",
"site+obs"), class = "factor")), row.names = c(NA, -2L
), class = c("model.specs", "data.frame"), object.info = c(package = "unmarked",
func = "occuRN", className = "unmarkedFitOccuRN", fitType = "occuRN"
))), unmarkedFitOccuTTD = list(occuTTD = structure(list(model = c("occupancy",
"detection", "colonization", "extinction", "shape"), item.name = c("psi",
"det", "col", "ext", "shape"), formula.arg = c("psiformula",
"detformula", "gammaformula", "epsilonformula", NA), name = c("Occupancy",
"Detection", "Colonization", "Extinction", "Weibull shape"
), short.name = c("psi", "lam", "col", "ext", "k"), formula.slot = c("psiformula",
"detformula", "gamformula", "epsformula", NA), formlist.name = c(NA_character_,
NA_character_, NA_character_, NA_character_, NA_character_
), formula.slot2 = c(NA_character_, NA_character_, NA_character_,
NA_character_, NA_character_), data = structure(c(1L, 3L,
2L, 2L, NA), levels = c("site", "site+year", "site+year+obs"
), class = "factor")), row.names = c(NA, -5L), class = c("model.specs",
"data.frame"), object.info = c(package = "unmarked", func = "occuTTD",
className = "unmarkedFitOccuTTD", fitType = "occuTTD"))),
unmarkedFitPCO = list(pcountOpen = structure(list(model = c("abundance",
"recruitment", "recruitment", "growth", "growth", "growth",
"survival", "carrying capacity", "detection", "immigration",
"dispersion", "zeroinfl"), item.name = c("lambda", "gamma",
"gamma", "gamma", "gamma", "gamma", "omega", "omega", "det",
"iota", "alpha", "psi"), formula.arg = c("lambdaformula",
"gammaformula", "gammaformula", "gammaformula", "gammaformula",
"gammaformula", "omegaformula", "omegaformula", "pformula",
"iotaformula", NA, NA), name = c("Abundance", "Recruitment",
"Recruitment", "Growth Rate", "Growth Rate", "Growth Rate",
"Apparent Survival", "Carrying Capacity", "Detection", "Immigration",
"Dispersion", "Zero-inflation"), short.name = c("lam", "gamConst",
"gamAR", "gamTrend", "gamRicker", "gamGomp", "omega", "omCarCap",
"p", "iota", "alpha", "psi"), formula.slot = c("formlist",
"formlist", "formlist", "formlist", "formlist", "formlist",
"formlist", "formlist", "formlist", "formlist", NA, NA),
formlist.name = c("lambdaformula", "gammaformula", "gammaformula",
"gammaformula", "gammaformula", "gammaformula", "omegaformula",
"omegaformula", "pformula", "iotaformula", NA, NA), formula.slot2 = c("formula1",
"formula2", "formula2", "formula2", "formula2", "formula2",
"formula3", "formula3", "formula4", "formula5", NA, NA
), data = structure(c(1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
3L, 2L, NA, NA), levels = c("site", "site+year", "site+year+obs"
), class = "factor")), row.names = c(NA, -12L), class = c("model.specs",
"data.frame"), object.info = c(package = "unmarked", func = "pcountOpen",
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func = "pcount", className = "unmarkedFitPCount", fitType = "pcount"
)))))
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