history.md

In xinchoubiology/Rcppsva: Rcpp Integration Surrogate Variable Analysis

Rcppsva 0.1.0

Rcpp Integration Surrogate Variable Analysis and Rewrite by RcppEigen and RcppGSL.

Rcppsva 0.1.2

• Update added original version of bump hunting for DMR(differential methylation region) by non-parametric methods(Permutations && Bootstrap)

• Update in helper.R # 392 |

sum(abs(sum(ix[,3])) >= abs(colSums(ix[,-(1:7)])))/ L -> sum(abs(sum(ix[,3])) <= abs(colSums(ix[,-(1:7)])))/ L

• @Jun, 5. Bugs corrected in bootstrap test method

• @Jun, 6. Comb-p method started

• @Jun, 7. Correlation Clustering Algorithm added

• @Jun, 8. Accelerate recursive merge of region by prefix-product(Parallization)

Rcppsva 0.1.3

• Combine-pvalue algorithm for DMR search added

• @Jun, 11. Pass weight argument to combp function should be fixed

• @Jun, 14. correct the correlateClusterMaker and Segments overlap problem, actually, we should decovolute the correlateClusterMaker and Segments.

Rcppsva 0.1.4

• @Sep, 6. fast hierachical clustering by rnn added. R-comapatible hclust object will return by HClust function
• @Sep, 8. Bugs fixed for HClust, which occurs when a lot of 0-distance node pairs exist.
• @Sep, 15. Gap statistic added
• @Sep, 17. Start rebuild Rcppdmr Package for our complete data

xinchoubiology/Rcppsva documentation built on May 4, 2019, 1:06 p.m.