getXcmsRaw-methods: Load the raw data for one or more files in the xcmsSet

In xiaodfeng/DynamicXCMS: LC-MS and GC-MS Data Analysis

Load the raw data for one or more files in the xcmsSet

Description

Reads the raw data applies evential retention time corrections and waters Lock mass correction and returns it as an xcmsRaw object (or list of xcmsRaw objects) for one or more files of the xcmsSet object.

Arguments

object	the xcmsSet object
sampleidx	The index of the sample for which the raw data should be returned. Can be a single number or a numeric vector with the indices. Alternatively, the file name can be specified.
profmethod	The profile method.
profstep	The profile step.
rt	Whether corrected or raw retention times should be returned.
...	Additional arguments submitted to the xcmsRaw function.

Value

A single xcmsRaw object or a list of xcmsRaw objects.

Methods

object = "xcmsSet"

getXcmsRaw(object, sampleidx=1, profmethod=profinfo(object)$method, profstep=profinfo(object)$step, rt=c("corrected", "raw"), ... )

Author(s)

Johannes Rainer, [e-mail]

See Also

xcmsRaw-class,

xiaodfeng/DynamicXCMS documentation built on Aug. 6, 2023, 3:02 p.m.