This is an R package for the VAMF algorithm implementation. It is still under development. For more information see the BioRxiv preprint.
First, make sure rstan is installed and working. Then you should be able to use
install.packages("devtools")
devtools::install_github("willtownes/vamf")
So far there is only one exported function vamf
. Check out the help file in an interactive session or the vignette.
The core of VAMF is written in the probabilistic programming language Stan. See exec/vamf.stan
in the repository.
Developer: Will Townes
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