reintegrate_seu: Reintegrate (filtered) seurat objects

In whtns/seuratTools: Tools for Managing Seurat Objects

Reintegrate (filtered) seurat objects

Description

1. split by batch

2. integrate

3. run integration pipeline and save

Usage

reintegrate_seu(
  seu,
  feature = "gene",
  suffix = "",
  reduction = "pca",
  algorithm = 1,
  ...
)

Arguments

seu	A seurat object
suffix	to be appended to file saved in output dir
reduction	to use default is pca

Examples

panc8$batch <- panc8$gene$tech
reintegrate_seu(panc8)

whtns/seuratTools documentation built on Oct. 28, 2024, 7:18 a.m.