plot_all_transcripts: Plot All Transcripts

In whtns/seuratTools: Tools for Managing Seurat Objects

Plot All Transcripts

Description

plot expression all transcripts for an input gene superimposed on an embedding

Usage

plot_all_transcripts(
  seu,
  features,
  embedding = "umap",
  from_gene = TRUE,
  combine = TRUE
)

Arguments

seu	A seurat object
features	gene or vector of transcripts
embedding	umap
from_gene	whether to look up transcripts for an input gene

Examples

processed_seu <- clustering_workflow(human_gene_transcript_seu)
transcripts_to_plot <- genes_to_transcripts("RXRG")
plot_all_transcripts(processed_seu, features = transcripts_to_plot)

whtns/seuratTools documentation built on Oct. 28, 2024, 7:18 a.m.