Files in welch16/ChIPexoQual
ChIPexoQual
.Rbuildignore
.Rinstignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/base_blacklist.R
R/base_subsampling.R
R/base_summaryPlots.R
R/base_summaryStats.R
R/data.R
R/methods_ExoData.R
README.md
data/blacklists.RData
data/exoExample.RData
docs/articles/biblio.bib
docs/articles/index.html
docs/articles/vignette.html
docs/articles/vignette_files/figure-html/ARC1-1.png
docs/articles/vignette_files/figure-html/ARC2-1.png
docs/articles/vignette_files/figure-html/param_dist-1.png
docs/articles/vignette_files/figure-html/strand1-1.png
docs/articles/vignette_files/figure-html/subsamplots-1.png
docs/authors.html
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/reference/ARCvURCplot-4.png
docs/reference/ARCvURCplot.html
docs/reference/ExoData.html
docs/reference/ExoDataSubsampling.html
docs/reference/FSRDistplot-2.png
docs/reference/FSRDistplot.html
docs/reference/MAplot-2.png
docs/reference/MAplot.html
docs/reference/beta1-methods.html
docs/reference/beta2-methods.html
docs/reference/calculateParamDist.html
docs/reference/exoExample.html
docs/reference/index.html
docs/reference/nreads-methods.html
docs/reference/paramDist-methods.html
docs/reference/paramDistBoxplot-2.png
docs/reference/paramDistBoxplot.html
docs/reference/regionCompplot-2.png
docs/reference/regionCompplot.html
inst/extdata/ce10-blacklist.bed.gz
inst/extdata/dm3-blacklist.bed.gz
inst/extdata/hg37-blacklist.bed.gz
inst/extdata/hg38-blacklist.bed.gz
inst/extdata/mm10-blacklist.bed.gz
inst/extdata/mm9-blacklist.bed.gz
inst/scripts/convertBlacklist2GRanges.R
man/ARCvURCplot.Rd
man/ExoData.Rd
man/ExoDataBlacklist.Rd
man/ExoDataSubsampling.Rd
man/FSRDistplot.Rd
man/MAplot.Rd
man/beta1-methods.Rd
man/beta2-methods.Rd
man/blacklists.Rd
man/calculateParamDist.Rd
man/exoExample.Rd
man/formatRegions.Rd
man/nreads-methods.Rd
man/paramDist-methods.Rd
man/paramDistBoxplot.Rd
man/regionCompplot.Rd
tests/testthat.R
tests/testthat/test_ExoDataBlacklists.R
tests/testthat/tests_ExoData.R
tests/testthat/tests_summary_plots.R
vignettes/biblio.bib
vignettes/vignette.Rmd
