Man pages for weililab/scMAGeCK
Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data
| assign_cell_identity | Assign single cell identity to genes to be perturbed. |
| featurePlot | Detect the sgRNA distribution and generate Vlnplot to... |
| guidematrix_to_triplet | Convert guide matrix into a dataframe containing cell,... |
| pre_processRDS | Integrate the imformation of sgRNA into RDS file for the... |
| scmageck_best_lambda | Find the best lambda using negative controls |
| scmageck_eff_estimate | Detect heterogenous perturbation responses from Perturb-seq... |
| scmageck_lr | Use linear regression to test the association of gene... |
| scmageck-package | Identify genes associated with multiple expression phenotypes... |
| scmageck_rra | Use RRA to test the association of gene knockout with certain... |
| selectPlot | generate the selection plot |
