waldronlab/lefser: R implementation of the LEfSE method for microbiome biomarker discovery
lefser is the R implementation of the popular microbiome biomarker discovery too, LEfSe. It uses the Kruskal-Wallis test, Wilcoxon-Rank Sum test, and Linear Discriminant Analysis to find biomarkers from two-level classes (and optional sub-classes).
Getting started
Browse package contents
Package details |
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| Bioconductor views | Classification DifferentialExpression Microbiome Sequencing Software StatisticalMethod |
| Maintainer | |
| License | Artistic-2.0 |
| Version | 1.17.1 |
| URL | https://github.com/waldronlab/lefser |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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