R/curatedMetagenomicData-defunct.R
In waldronlab/curatedMetagenomicData: Curated Metagenomic Data of the Human Microbiome
#' Defunct functions in package ‘curatedMetagenomicData’
#'
#' These functions are defunct and no longer available.
#'
#' The following functions (methods) are defunct:
#' * `cmdValidVersions()`
#' * `getMetaphlanTree()`
#' * `ExpressionSet2MRexperiment()`
#' * `ExpressionSet2phyloseq()`
#'
#' The following functions (accessors) are defunct:
#' * `AsnicarF_2017.genefamilies_relab.milk()`
#' * `AsnicarF_2017.genefamilies_relab.stool()`
#' * `AsnicarF_2017.marker_abundance.milk()`
#' * `AsnicarF_2017.marker_abundance.stool()`
#' * `AsnicarF_2017.marker_presence.milk()`
#' * `AsnicarF_2017.marker_presence.stool()`
#' * `AsnicarF_2017.metaphlan_bugs_list.milk()`
#' * `AsnicarF_2017.metaphlan_bugs_list.stool()`
#' * `AsnicarF_2017.pathabundance_relab.milk()`
#' * `AsnicarF_2017.pathabundance_relab.stool()`
#' * `AsnicarF_2017.pathcoverage.milk()`
#' * `AsnicarF_2017.pathcoverage.stool()`
#' * `BackhedF_2015.genefamilies_relab.stool()`
#' * `BackhedF_2015.marker_abundance.stool()`
#' * `BackhedF_2015.marker_presence.stool()`
#' * `BackhedF_2015.metaphlan_bugs_list.stool()`
#' * `BackhedF_2015.pathabundance_relab.stool()`
#' * `BackhedF_2015.pathcoverage.stool()`
#' * `Bengtsson-PalmeJ_2015.genefamilies_relab.stool()`
#' * `Bengtsson-PalmeJ_2015.marker_abundance.stool()`
#' * `Bengtsson-PalmeJ_2015.marker_presence.stool()`
#' * `Bengtsson-PalmeJ_2015.metaphlan_bugs_list.stool()`
#' * `Bengtsson-PalmeJ_2015.pathabundance_relab.stool()`
#' * `Bengtsson-PalmeJ_2015.pathcoverage.stool()`
#' * `BritoIL_2016.genefamilies_relab.oralcavity()`
#' * `BritoIL_2016.genefamilies_relab.stool()`
#' * `BritoIL_2016.marker_abundance.oralcavity()`
#' * `BritoIL_2016.marker_abundance.stool()`
#' * `BritoIL_2016.marker_presence.oralcavity()`
#' * `BritoIL_2016.marker_presence.stool()`
#' * `BritoIL_2016.metaphlan_bugs_list.oralcavity()`
#' * `BritoIL_2016.metaphlan_bugs_list.stool()`
#' * `BritoIL_2016.pathabundance_relab.oralcavity()`
#' * `BritoIL_2016.pathabundance_relab.stool()`
#' * `BritoIL_2016.pathcoverage.oralcavity()`
#' * `BritoIL_2016.pathcoverage.stool()`
#' * `Castro_NallarE_2015.genefamilies_relab.oralcavity()`
#' * `Castro_NallarE_2015.marker_abundance.oralcavity()`
#' * `Castro_NallarE_2015.marker_presence.oralcavity()`
#' * `Castro_NallarE_2015.metaphlan_bugs_list.oralcavity()`
#' * `Castro_NallarE_2015.pathabundance_relab.oralcavity()`
#' * `Castro_NallarE_2015.pathcoverage.oralcavity()`
#' * `Castro-NallarE_2015.genefamilies_relab.oralcavity()`
#' * `Castro-NallarE_2015.marker_abundance.oralcavity()`
#' * `Castro-NallarE_2015.marker_presence.oralcavity()`
#' * `Castro-NallarE_2015.metaphlan_bugs_list.oralcavity()`
#' * `Castro-NallarE_2015.pathabundance_relab.oralcavity()`
#' * `Castro-NallarE_2015.pathcoverage.oralcavity()`
#' * `ChengpingW_2017.genefamilies_relab.stool()`
#' * `ChengpingW_2017.marker_abundance.stool()`
#' * `ChengpingW_2017.marker_presence.stool()`
#' * `ChengpingW_2017.metaphlan_bugs_list.stool()`
#' * `ChengpingW_2017.pathabundance_relab.stool()`
#' * `ChengpingW_2017.pathcoverage.stool()`
#' * `ChngKR_2016.genefamilies_relab.skin()`
#' * `ChngKR_2016.marker_abundance.skin()`
#' * `ChngKR_2016.marker_presence.skin()`
#' * `ChngKR_2016.metaphlan_bugs_list.skin()`
#' * `ChngKR_2016.pathabundance_relab.skin()`
#' * `ChngKR_2016.pathcoverage.skin()`
#' * `CosteaPI_2017.genefamilies_relab.stool()`
#' * `CosteaPI_2017.marker_abundance.stool()`
#' * `CosteaPI_2017.marker_presence.stool()`
#' * `CosteaPI_2017.metaphlan_bugs_list.stool()`
#' * `CosteaPI_2017.pathabundance_relab.stool()`
#' * `CosteaPI_2017.pathcoverage.stool()`
#' * `DavidLA_2015.genefamilies_relab.stool()`
#' * `DavidLA_2015.marker_abundance.stool()`
#' * `DavidLA_2015.marker_presence.stool()`
#' * `DavidLA_2015.metaphlan_bugs_list.stool()`
#' * `DavidLA_2015.pathabundance_relab.stool()`
#' * `DavidLA_2015.pathcoverage.stool()`
#' * `DhakanDB_2019.genefamilies_relab.stool()`
#' * `DhakanDB_2019.marker_abundance.stool()`
#' * `DhakanDB_2019.marker_presence.stool()`
#' * `DhakanDB_2019.metaphlan_bugs_list.stool()`
#' * `DhakanDB_2019.pathabundance_relab.stool()`
#' * `DhakanDB_2019.pathcoverage.stool()`
#' * `FengQ_2015.genefamilies_relab.stool()`
#' * `FengQ_2015.marker_abundance.stool()`
#' * `FengQ_2015.marker_presence.stool()`
#' * `FengQ_2015.metaphlan_bugs_list.stool()`
#' * `FengQ_2015.pathabundance_relab.stool()`
#' * `FengQ_2015.pathcoverage.stool()`
#' * `FerrettiP_2018.genefamilies_relab.oralcavity()`
#' * `FerrettiP_2018.genefamilies_relab.skin()`
#' * `FerrettiP_2018.genefamilies_relab.stool()`
#' * `FerrettiP_2018.genefamilies_relab.vagina()`
#' * `FerrettiP_2018.marker_abundance.oralcavity()`
#' * `FerrettiP_2018.marker_abundance.skin()`
#' * `FerrettiP_2018.marker_abundance.stool()`
#' * `FerrettiP_2018.marker_abundance.vagina()`
#' * `FerrettiP_2018.marker_presence.oralcavity()`
#' * `FerrettiP_2018.marker_presence.skin()`
#' * `FerrettiP_2018.marker_presence.stool()`
#' * `FerrettiP_2018.marker_presence.vagina()`
#' * `FerrettiP_2018.metaphlan_bugs_list.oralcavity()`
#' * `FerrettiP_2018.metaphlan_bugs_list.skin()`
#' * `FerrettiP_2018.metaphlan_bugs_list.stool()`
#' * `FerrettiP_2018.metaphlan_bugs_list.vagina()`
#' * `FerrettiP_2018.pathabundance_relab.oralcavity()`
#' * `FerrettiP_2018.pathabundance_relab.skin()`
#' * `FerrettiP_2018.pathabundance_relab.stool()`
#' * `FerrettiP_2018.pathabundance_relab.vagina()`
#' * `FerrettiP_2018.pathcoverage.oralcavity()`
#' * `FerrettiP_2018.pathcoverage.skin()`
#' * `FerrettiP_2018.pathcoverage.stool()`
#' * `FerrettiP_2018.pathcoverage.vagina()`
#' * `GopalakrishnanV_2018.genefamilies_relab.stool()`
#' * `GopalakrishnanV_2018.marker_abundance.stool()`
#' * `GopalakrishnanV_2018.marker_presence.stool()`
#' * `GopalakrishnanV_2018.metaphlan_bugs_list.stool()`
#' * `GopalakrishnanV_2018.pathabundance_relab.stool()`
#' * `GopalakrishnanV_2018.pathcoverage.stool()`
#' * `HanniganGD_2017.genefamilies_relab.stool()`
#' * `HanniganGD_2017.marker_abundance.stool()`
#' * `HanniganGD_2017.marker_presence.stool()`
#' * `HanniganGD_2017.metaphlan_bugs_list.stool()`
#' * `HanniganGD_2017.pathabundance_relab.stool()`
#' * `HanniganGD_2017.pathcoverage.stool()`
#' * `HansenLBS_2018.genefamilies_relab.stool()`
#' * `HansenLBS_2018.marker_abundance.stool()`
#' * `HansenLBS_2018.marker_presence.stool()`
#' * `HansenLBS_2018.metaphlan_bugs_list.stool()`
#' * `HansenLBS_2018.pathabundance_relab.stool()`
#' * `HansenLBS_2018.pathcoverage.stool()`
#' * `Heitz_BuschartA_2016.genefamilies_relab.stool()`
#' * `Heitz_BuschartA_2016.marker_abundance.stool()`
#' * `Heitz_BuschartA_2016.marker_presence.stool()`
#' * `Heitz_BuschartA_2016.metaphlan_bugs_list.stool()`
#' * `Heitz_BuschartA_2016.pathabundance_relab.stool()`
#' * `Heitz_BuschartA_2016.pathcoverage.stool()`
#' * `Heitz-BuschartA_2016.genefamilies_relab.stool()`
#' * `Heitz-BuschartA_2016.marker_abundance.stool()`
#' * `Heitz-BuschartA_2016.marker_presence.stool()`
#' * `Heitz-BuschartA_2016.metaphlan_bugs_list.stool()`
#' * `Heitz-BuschartA_2016.pathabundance_relab.stool()`
#' * `Heitz-BuschartA_2016.pathcoverage.stool()`
#' * `HMP_2012.genefamilies_relab.nasalcavity()`
#' * `HMP_2012.genefamilies_relab.oralcavity()`
#' * `HMP_2012.genefamilies_relab.skin()`
#' * `HMP_2012.genefamilies_relab.stool()`
#' * `HMP_2012.genefamilies_relab.vagina()`
#' * `HMP_2012.marker_abundance.nasalcavity()`
#' * `HMP_2012.marker_abundance.oralcavity()`
#' * `HMP_2012.marker_abundance.skin()`
#' * `HMP_2012.marker_abundance.stool()`
#' * `HMP_2012.marker_abundance.vagina()`
#' * `HMP_2012.marker_presence.nasalcavity()`
#' * `HMP_2012.marker_presence.oralcavity()`
#' * `HMP_2012.marker_presence.skin()`
#' * `HMP_2012.marker_presence.stool()`
#' * `HMP_2012.marker_presence.vagina()`
#' * `HMP_2012.metaphlan_bugs_list.nasalcavity()`
#' * `HMP_2012.metaphlan_bugs_list.oralcavity()`
#' * `HMP_2012.metaphlan_bugs_list.skin()`
#' * `HMP_2012.metaphlan_bugs_list.stool()`
#' * `HMP_2012.metaphlan_bugs_list.vagina()`
#' * `HMP_2012.pathabundance_relab.nasalcavity()`
#' * `HMP_2012.pathabundance_relab.oralcavity()`
#' * `HMP_2012.pathabundance_relab.skin()`
#' * `HMP_2012.pathabundance_relab.stool()`
#' * `HMP_2012.pathabundance_relab.vagina()`
#' * `HMP_2012.pathcoverage.nasalcavity()`
#' * `HMP_2012.pathcoverage.oralcavity()`
#' * `HMP_2012.pathcoverage.skin()`
#' * `HMP_2012.pathcoverage.stool()`
#' * `HMP_2012.pathcoverage.vagina()`
#' * `JieZ_2017.genefamilies_relab.stool()`
#' * `JieZ_2017.marker_abundance.stool()`
#' * `JieZ_2017.marker_presence.stool()`
#' * `JieZ_2017.metaphlan_bugs_list.stool()`
#' * `JieZ_2017.pathabundance_relab.stool()`
#' * `JieZ_2017.pathcoverage.stool()`
#' * `KarlssonFH_2013.genefamilies_relab.stool()`
#' * `KarlssonFH_2013.marker_abundance.stool()`
#' * `KarlssonFH_2013.marker_presence.stool()`
#' * `KarlssonFH_2013.metaphlan_bugs_list.stool()`
#' * `KarlssonFH_2013.pathabundance_relab.stool()`
#' * `KarlssonFH_2013.pathcoverage.stool()`
#' * `KieserS_2018.genefamilies_relab.stool()`
#' * `KieserS_2018.marker_abundance.stool()`
#' * `KieserS_2018.marker_presence.stool()`
#' * `KieserS_2018.metaphlan_bugs_list.stool()`
#' * `KieserS_2018.pathabundance_relab.stool()`
#' * `KieserS_2018.pathcoverage.stool()`
#' * `KosticAD_2015.genefamilies_relab.stool()`
#' * `KosticAD_2015.marker_abundance.stool()`
#' * `KosticAD_2015.marker_presence.stool()`
#' * `KosticAD_2015.metaphlan_bugs_list.stool()`
#' * `KosticAD_2015.pathabundance_relab.stool()`
#' * `KosticAD_2015.pathcoverage.stool()`
#' * `LeChatelierE_2013.genefamilies_relab.stool()`
#' * `LeChatelierE_2013.marker_abundance.stool()`
#' * `LeChatelierE_2013.marker_presence.stool()`
#' * `LeChatelierE_2013.metaphlan_bugs_list.stool()`
#' * `LeChatelierE_2013.pathabundance_relab.stool()`
#' * `LeChatelierE_2013.pathcoverage.stool()`
#' * `LiJ_2014.genefamilies_relab.stool()`
#' * `LiJ_2014.marker_abundance.stool()`
#' * `LiJ_2014.marker_presence.stool()`
#' * `LiJ_2014.metaphlan_bugs_list.stool()`
#' * `LiJ_2014.pathabundance_relab.stool()`
#' * `LiJ_2014.pathcoverage.stool()`
#' * `LiJ_2017.genefamilies_relab.stool()`
#' * `LiJ_2017.marker_abundance.stool()`
#' * `LiJ_2017.marker_presence.stool()`
#' * `LiJ_2017.metaphlan_bugs_list.stool()`
#' * `LiJ_2017.pathabundance_relab.stool()`
#' * `LiJ_2017.pathcoverage.stool()`
#' * `LiSS_2016.genefamilies_relab.stool()`
#' * `LiSS_2016.marker_abundance.stool()`
#' * `LiSS_2016.marker_presence.stool()`
#' * `LiSS_2016.metaphlan_bugs_list.stool()`
#' * `LiSS_2016.pathabundance_relab.stool()`
#' * `LiSS_2016.pathcoverage.stool()`
#' * `LiuW_2016.genefamilies_relab.stool()`
#' * `LiuW_2016.marker_abundance.stool()`
#' * `LiuW_2016.marker_presence.stool()`
#' * `LiuW_2016.metaphlan_bugs_list.stool()`
#' * `LiuW_2016.pathabundance_relab.stool()`
#' * `LiuW_2016.pathcoverage.stool()`
#' * `LomanNJ_2013.genefamilies_relab.stool()`
#' * `LomanNJ_2013.marker_abundance.stool()`
#' * `LomanNJ_2013.marker_presence.stool()`
#' * `LomanNJ_2013.metaphlan_bugs_list.stool()`
#' * `LomanNJ_2013.pathabundance_relab.stool()`
#' * `LomanNJ_2013.pathcoverage.stool()`
#' * `LoombaR_2017.genefamilies_relab.stool()`
#' * `LoombaR_2017.marker_abundance.stool()`
#' * `LoombaR_2017.marker_presence.stool()`
#' * `LoombaR_2017.metaphlan_bugs_list.stool()`
#' * `LoombaR_2017.pathabundance_relab.stool()`
#' * `LoombaR_2017.pathcoverage.stool()`
#' * `LouisS_2016.genefamilies_relab.stool()`
#' * `LouisS_2016.marker_abundance.stool()`
#' * `LouisS_2016.marker_presence.stool()`
#' * `LouisS_2016.metaphlan_bugs_list.stool()`
#' * `LouisS_2016.pathabundance_relab.stool()`
#' * `LouisS_2016.pathcoverage.stool()`
#' * `MatsonV_2018.genefamilies_relab.stool()`
#' * `MatsonV_2018.marker_abundance.stool()`
#' * `MatsonV_2018.marker_presence.stool()`
#' * `MatsonV_2018.metaphlan_bugs_list.stool()`
#' * `MatsonV_2018.pathabundance_relab.stool()`
#' * `MatsonV_2018.pathcoverage.stool()`
#' * `NielsenHB_2014.genefamilies_relab.stool()`
#' * `NielsenHB_2014.marker_abundance.stool()`
#' * `NielsenHB_2014.marker_presence.stool()`
#' * `NielsenHB_2014.metaphlan_bugs_list.stool()`
#' * `NielsenHB_2014.pathabundance_relab.stool()`
#' * `NielsenHB_2014.pathcoverage.stool()`
#' * `Obregon_TitoAJ_2015.genefamilies_relab.stool()`
#' * `Obregon_TitoAJ_2015.marker_abundance.stool()`
#' * `Obregon_TitoAJ_2015.marker_presence.stool()`
#' * `Obregon_TitoAJ_2015.metaphlan_bugs_list.stool()`
#' * `Obregon_TitoAJ_2015.pathabundance_relab.stool()`
#' * `Obregon_TitoAJ_2015.pathcoverage.stool()`
#' * `Obregon-TitoAJ_2015.genefamilies_relab.stool()`
#' * `Obregon-TitoAJ_2015.marker_abundance.stool()`
#' * `Obregon-TitoAJ_2015.marker_presence.stool()`
#' * `Obregon-TitoAJ_2015.metaphlan_bugs_list.stool()`
#' * `Obregon-TitoAJ_2015.pathabundance_relab.stool()`
#' * `Obregon-TitoAJ_2015.pathcoverage.stool()`
#' * `OhJ_2014.genefamilies_relab.skin()`
#' * `OhJ_2014.marker_abundance.skin()`
#' * `OhJ_2014.marker_presence.skin()`
#' * `OhJ_2014.metaphlan_bugs_list.skin()`
#' * `OhJ_2014.pathabundance_relab.skin()`
#' * `OhJ_2014.pathcoverage.skin()`
#' * `OlmMR_2017.genefamilies_relab.oralcavity()`
#' * `OlmMR_2017.genefamilies_relab.skin()`
#' * `OlmMR_2017.genefamilies_relab.stool()`
#' * `OlmMR_2017.marker_abundance.oralcavity()`
#' * `OlmMR_2017.marker_abundance.skin()`
#' * `OlmMR_2017.marker_abundance.stool()`
#' * `OlmMR_2017.marker_presence.oralcavity()`
#' * `OlmMR_2017.marker_presence.skin()`
#' * `OlmMR_2017.marker_presence.stool()`
#' * `OlmMR_2017.metaphlan_bugs_list.oralcavity()`
#' * `OlmMR_2017.metaphlan_bugs_list.skin()`
#' * `OlmMR_2017.metaphlan_bugs_list.stool()`
#' * `OlmMR_2017.pathabundance_relab.oralcavity()`
#' * `OlmMR_2017.pathabundance_relab.skin()`
#' * `OlmMR_2017.pathabundance_relab.stool()`
#' * `OlmMR_2017.pathcoverage.oralcavity()`
#' * `OlmMR_2017.pathcoverage.skin()`
#' * `OlmMR_2017.pathcoverage.stool()`
#' * `PasolliE_2018.genefamilies_relab.stool()`
#' * `PasolliE_2018.marker_abundance.stool()`
#' * `PasolliE_2018.marker_presence.stool()`
#' * `PasolliE_2018.metaphlan_bugs_list.stool()`
#' * `PasolliE_2018.pathabundance_relab.stool()`
#' * `PasolliE_2018.pathcoverage.stool()`
#' * `PehrssonE_2016.genefamilies_relab.stool()`
#' * `PehrssonE_2016.marker_abundance.stool()`
#' * `PehrssonE_2016.marker_presence.stool()`
#' * `PehrssonE_2016.metaphlan_bugs_list.stool()`
#' * `PehrssonE_2016.pathabundance_relab.stool()`
#' * `PehrssonE_2016.pathcoverage.stool()`
#' * `QinJ_2012.genefamilies_relab.stool()`
#' * `QinJ_2012.marker_abundance.stool()`
#' * `QinJ_2012.marker_presence.stool()`
#' * `QinJ_2012.metaphlan_bugs_list.stool()`
#' * `QinJ_2012.pathabundance_relab.stool()`
#' * `QinJ_2012.pathcoverage.stool()`
#' * `QinN_2014.genefamilies_relab.stool()`
#' * `QinN_2014.marker_abundance.stool()`
#' * `QinN_2014.marker_presence.stool()`
#' * `QinN_2014.metaphlan_bugs_list.stool()`
#' * `QinN_2014.pathabundance_relab.stool()`
#' * `QinN_2014.pathcoverage.stool()`
#' * `RampelliS_2015.genefamilies_relab.stool()`
#' * `RampelliS_2015.marker_abundance.stool()`
#' * `RampelliS_2015.marker_presence.stool()`
#' * `RampelliS_2015.metaphlan_bugs_list.stool()`
#' * `RampelliS_2015.pathabundance_relab.stool()`
#' * `RampelliS_2015.pathcoverage.stool()`
#' * `RaymondF_2016.genefamilies_relab.stool()`
#' * `RaymondF_2016.marker_abundance.stool()`
#' * `RaymondF_2016.marker_presence.stool()`
#' * `RaymondF_2016.metaphlan_bugs_list.stool()`
#' * `RaymondF_2016.pathabundance_relab.stool()`
#' * `RaymondF_2016.pathcoverage.stool()`
#' * `SchirmerM_2016.genefamilies_relab.stool()`
#' * `SchirmerM_2016.marker_abundance.stool()`
#' * `SchirmerM_2016.marker_presence.stool()`
#' * `SchirmerM_2016.metaphlan_bugs_list.stool()`
#' * `SchirmerM_2016.pathabundance_relab.stool()`
#' * `SchirmerM_2016.pathcoverage.stool()`
#' * `ShiB_2015.genefamilies_relab.oralcavity()`
#' * `ShiB_2015.marker_abundance.oralcavity()`
#' * `ShiB_2015.marker_presence.oralcavity()`
#' * `ShiB_2015.metaphlan_bugs_list.oralcavity()`
#' * `ShiB_2015.pathabundance_relab.oralcavity()`
#' * `ShiB_2015.pathcoverage.oralcavity()`
#' * `SmitsSA_2017.genefamilies_relab.stool()`
#' * `SmitsSA_2017.marker_abundance.stool()`
#' * `SmitsSA_2017.marker_presence.stool()`
#' * `SmitsSA_2017.metaphlan_bugs_list.stool()`
#' * `SmitsSA_2017.pathabundance_relab.stool()`
#' * `SmitsSA_2017.pathcoverage.stool()`
#' * `TettAJ_2016.genefamilies_relab.skin()`
#' * `TettAJ_2016.marker_abundance.skin()`
#' * `TettAJ_2016.marker_presence.skin()`
#' * `TettAJ_2016.metaphlan_bugs_list.skin()`
#' * `TettAJ_2016.pathabundance_relab.skin()`
#' * `TettAJ_2016.pathcoverage.skin()`
#' * `TettAJ_2019_a.genefamilies_relab.stool()`
#' * `TettAJ_2019_a.marker_abundance.stool()`
#' * `TettAJ_2019_a.marker_presence.stool()`
#' * `TettAJ_2019_a.metaphlan_bugs_list.stool()`
#' * `TettAJ_2019_a.pathabundance_relab.stool()`
#' * `TettAJ_2019_a.pathcoverage.stool()`
#' * `TettAJ_2019_b.genefamilies_relab.stool()`
#' * `TettAJ_2019_b.marker_abundance.stool()`
#' * `TettAJ_2019_b.marker_presence.stool()`
#' * `TettAJ_2019_b.metaphlan_bugs_list.stool()`
#' * `TettAJ_2019_b.pathabundance_relab.stool()`
#' * `TettAJ_2019_b.pathcoverage.stool()`
#' * `TettAJ_2019_c.genefamilies_relab.stool()`
#' * `TettAJ_2019_c.marker_abundance.stool()`
#' * `TettAJ_2019_c.marker_presence.stool()`
#' * `TettAJ_2019_c.metaphlan_bugs_list.stool()`
#' * `TettAJ_2019_c.pathabundance_relab.stool()`
#' * `TettAJ_2019_c.pathcoverage.stool()`
#' * `ThomasAM_2018a.genefamilies_relab.stool()`
#' * `ThomasAM_2018a.marker_abundance.stool()`
#' * `ThomasAM_2018a.marker_presence.stool()`
#' * `ThomasAM_2018a.metaphlan_bugs_list.stool()`
#' * `ThomasAM_2018a.pathabundance_relab.stool()`
#' * `ThomasAM_2018a.pathcoverage.stool()`
#' * `ThomasAM_2018b.genefamilies_relab.stool()`
#' * `ThomasAM_2018b.marker_abundance.stool()`
#' * `ThomasAM_2018b.marker_presence.stool()`
#' * `ThomasAM_2018b.metaphlan_bugs_list.stool()`
#' * `ThomasAM_2018b.pathabundance_relab.stool()`
#' * `ThomasAM_2018b.pathcoverage.stool()`
#' * `VatanenT_2016.genefamilies_relab.stool()`
#' * `VatanenT_2016.marker_abundance.stool()`
#' * `VatanenT_2016.marker_presence.stool()`
#' * `VatanenT_2016.metaphlan_bugs_list.stool()`
#' * `VatanenT_2016.pathabundance_relab.stool()`
#' * `VatanenT_2016.pathcoverage.stool()`
#' * `VincentC_2016.genefamilies_relab.stool()`
#' * `VincentC_2016.marker_abundance.stool()`
#' * `VincentC_2016.marker_presence.stool()`
#' * `VincentC_2016.metaphlan_bugs_list.stool()`
#' * `VincentC_2016.pathabundance_relab.stool()`
#' * `VincentC_2016.pathcoverage.stool()`
#' * `VogtmannE_2016.genefamilies_relab.stool()`
#' * `VogtmannE_2016.marker_abundance.stool()`
#' * `VogtmannE_2016.marker_presence.stool()`
#' * `VogtmannE_2016.metaphlan_bugs_list.stool()`
#' * `VogtmannE_2016.pathabundance_relab.stool()`
#' * `VogtmannE_2016.pathcoverage.stool()`
#' * `XieH_2016.genefamilies_relab.stool()`
#' * `XieH_2016.marker_abundance.stool()`
#' * `XieH_2016.marker_presence.stool()`
#' * `XieH_2016.metaphlan_bugs_list.stool()`
#' * `XieH_2016.pathabundance_relab.stool()`
#' * `XieH_2016.pathcoverage.stool()`
#' * `YeZ_2018.genefamilies_relab.stool()`
#' * `YeZ_2018.marker_abundance.stool()`
#' * `YeZ_2018.marker_presence.stool()`
#' * `YeZ_2018.metaphlan_bugs_list.stool()`
#' * `YeZ_2018.pathabundance_relab.stool()`
#' * `YeZ_2018.pathcoverage.stool()`
#' * `YuJ_2015.genefamilies_relab.stool()`
#' * `YuJ_2015.marker_abundance.stool()`
#' * `YuJ_2015.marker_presence.stool()`
#' * `YuJ_2015.metaphlan_bugs_list.stool()`
#' * `YuJ_2015.pathabundance_relab.stool()`
#' * `YuJ_2015.pathcoverage.stool()`
#' * `ZeeviD_2015.genefamilies_relab.stool()`
#' * `ZeeviD_2015.marker_abundance.stool()`
#' * `ZeeviD_2015.marker_presence.stool()`
#' * `ZeeviD_2015.metaphlan_bugs_list.stool()`
#' * `ZeeviD_2015.pathabundance_relab.stool()`
#' * `ZeeviD_2015.pathcoverage.stool()`
#' * `ZellerG_2014.genefamilies_relab.stool()`
#' * `ZellerG_2014.marker_abundance.stool()`
#' * `ZellerG_2014.marker_presence.stool()`
#' * `ZellerG_2014.metaphlan_bugs_list.stool()`
#' * `ZellerG_2014.pathabundance_relab.stool()`
#' * `ZellerG_2014.pathcoverage.stool()`
#'
#' @aliases
#' cmdValidVersions
#' getMetaphlanTree
#' ExpressionSet2MRexperiment
#' ExpressionSet2phyloseq
#' AsnicarF_2017.genefamilies_relab.milk
#' AsnicarF_2017.genefamilies_relab.stool
#' AsnicarF_2017.marker_abundance.milk
#' AsnicarF_2017.marker_abundance.stool
#' AsnicarF_2017.marker_presence.milk
#' AsnicarF_2017.marker_presence.stool
#' AsnicarF_2017.metaphlan_bugs_list.milk
#' AsnicarF_2017.metaphlan_bugs_list.stool
#' AsnicarF_2017.pathabundance_relab.milk
#' AsnicarF_2017.pathabundance_relab.stool
#' AsnicarF_2017.pathcoverage.milk
#' AsnicarF_2017.pathcoverage.stool
#' BackhedF_2015.genefamilies_relab.stool
#' BackhedF_2015.marker_abundance.stool
#' BackhedF_2015.marker_presence.stool
#' BackhedF_2015.metaphlan_bugs_list.stool
#' BackhedF_2015.pathabundance_relab.stool
#' BackhedF_2015.pathcoverage.stool
#' Bengtsson-PalmeJ_2015.genefamilies_relab.stool
#' Bengtsson-PalmeJ_2015.marker_abundance.stool
#' Bengtsson-PalmeJ_2015.marker_presence.stool
#' Bengtsson-PalmeJ_2015.metaphlan_bugs_list.stool
#' Bengtsson-PalmeJ_2015.pathabundance_relab.stool
#' Bengtsson-PalmeJ_2015.pathcoverage.stool
#' BritoIL_2016.genefamilies_relab.oralcavity
#' BritoIL_2016.genefamilies_relab.stool
#' BritoIL_2016.marker_abundance.oralcavity
#' BritoIL_2016.marker_abundance.stool
#' BritoIL_2016.marker_presence.oralcavity
#' BritoIL_2016.marker_presence.stool
#' BritoIL_2016.metaphlan_bugs_list.oralcavity
#' BritoIL_2016.metaphlan_bugs_list.stool
#' BritoIL_2016.pathabundance_relab.oralcavity
#' BritoIL_2016.pathabundance_relab.stool
#' BritoIL_2016.pathcoverage.oralcavity
#' BritoIL_2016.pathcoverage.stool
#' Castro_NallarE_2015.genefamilies_relab.oralcavity
#' Castro_NallarE_2015.marker_abundance.oralcavity
#' Castro_NallarE_2015.marker_presence.oralcavity
#' Castro_NallarE_2015.metaphlan_bugs_list.oralcavity
#' Castro_NallarE_2015.pathabundance_relab.oralcavity
#' Castro_NallarE_2015.pathcoverage.oralcavity
#' Castro-NallarE_2015.genefamilies_relab.oralcavity
#' Castro-NallarE_2015.marker_abundance.oralcavity
#' Castro-NallarE_2015.marker_presence.oralcavity
#' Castro-NallarE_2015.metaphlan_bugs_list.oralcavity
#' Castro-NallarE_2015.pathabundance_relab.oralcavity
#' Castro-NallarE_2015.pathcoverage.oralcavity
#' ChengpingW_2017.genefamilies_relab.stool
#' ChengpingW_2017.marker_abundance.stool
#' ChengpingW_2017.marker_presence.stool
#' ChengpingW_2017.metaphlan_bugs_list.stool
#' ChengpingW_2017.pathabundance_relab.stool
#' ChengpingW_2017.pathcoverage.stool
#' ChngKR_2016.genefamilies_relab.skin
#' ChngKR_2016.marker_abundance.skin
#' ChngKR_2016.marker_presence.skin
#' ChngKR_2016.metaphlan_bugs_list.skin
#' ChngKR_2016.pathabundance_relab.skin
#' ChngKR_2016.pathcoverage.skin
#' CosteaPI_2017.genefamilies_relab.stool
#' CosteaPI_2017.marker_abundance.stool
#' CosteaPI_2017.marker_presence.stool
#' CosteaPI_2017.metaphlan_bugs_list.stool
#' CosteaPI_2017.pathabundance_relab.stool
#' CosteaPI_2017.pathcoverage.stool
#' DavidLA_2015.genefamilies_relab.stool
#' DavidLA_2015.marker_abundance.stool
#' DavidLA_2015.marker_presence.stool
#' DavidLA_2015.metaphlan_bugs_list.stool
#' DavidLA_2015.pathabundance_relab.stool
#' DavidLA_2015.pathcoverage.stool
#' DhakanDB_2019.genefamilies_relab.stool
#' DhakanDB_2019.marker_abundance.stool
#' DhakanDB_2019.marker_presence.stool
#' DhakanDB_2019.metaphlan_bugs_list.stool
#' DhakanDB_2019.pathabundance_relab.stool
#' DhakanDB_2019.pathcoverage.stool
#' FengQ_2015.genefamilies_relab.stool
#' FengQ_2015.marker_abundance.stool
#' FengQ_2015.marker_presence.stool
#' FengQ_2015.metaphlan_bugs_list.stool
#' FengQ_2015.pathabundance_relab.stool
#' FengQ_2015.pathcoverage.stool
#' FerrettiP_2018.genefamilies_relab.oralcavity
#' FerrettiP_2018.genefamilies_relab.skin
#' FerrettiP_2018.genefamilies_relab.stool
#' FerrettiP_2018.genefamilies_relab.vagina
#' FerrettiP_2018.marker_abundance.oralcavity
#' FerrettiP_2018.marker_abundance.skin
#' FerrettiP_2018.marker_abundance.stool
#' FerrettiP_2018.marker_abundance.vagina
#' FerrettiP_2018.marker_presence.oralcavity
#' FerrettiP_2018.marker_presence.skin
#' FerrettiP_2018.marker_presence.stool
#' FerrettiP_2018.marker_presence.vagina
#' FerrettiP_2018.metaphlan_bugs_list.oralcavity
#' FerrettiP_2018.metaphlan_bugs_list.skin
#' FerrettiP_2018.metaphlan_bugs_list.stool
#' FerrettiP_2018.metaphlan_bugs_list.vagina
#' FerrettiP_2018.pathabundance_relab.oralcavity
#' FerrettiP_2018.pathabundance_relab.skin
#' FerrettiP_2018.pathabundance_relab.stool
#' FerrettiP_2018.pathabundance_relab.vagina
#' FerrettiP_2018.pathcoverage.oralcavity
#' FerrettiP_2018.pathcoverage.skin
#' FerrettiP_2018.pathcoverage.stool
#' FerrettiP_2018.pathcoverage.vagina
#' GopalakrishnanV_2018.genefamilies_relab.stool
#' GopalakrishnanV_2018.marker_abundance.stool
#' GopalakrishnanV_2018.marker_presence.stool
#' GopalakrishnanV_2018.metaphlan_bugs_list.stool
#' GopalakrishnanV_2018.pathabundance_relab.stool
#' GopalakrishnanV_2018.pathcoverage.stool
#' HanniganGD_2017.genefamilies_relab.stool
#' HanniganGD_2017.marker_abundance.stool
#' HanniganGD_2017.marker_presence.stool
#' HanniganGD_2017.metaphlan_bugs_list.stool
#' HanniganGD_2017.pathabundance_relab.stool
#' HanniganGD_2017.pathcoverage.stool
#' HansenLBS_2018.genefamilies_relab.stool
#' HansenLBS_2018.marker_abundance.stool
#' HansenLBS_2018.marker_presence.stool
#' HansenLBS_2018.metaphlan_bugs_list.stool
#' HansenLBS_2018.pathabundance_relab.stool
#' HansenLBS_2018.pathcoverage.stool
#' Heitz_BuschartA_2016.genefamilies_relab.stool
#' Heitz_BuschartA_2016.marker_abundance.stool
#' Heitz_BuschartA_2016.marker_presence.stool
#' Heitz_BuschartA_2016.metaphlan_bugs_list.stool
#' Heitz_BuschartA_2016.pathabundance_relab.stool
#' Heitz_BuschartA_2016.pathcoverage.stool
#' Heitz-BuschartA_2016.genefamilies_relab.stool
#' Heitz-BuschartA_2016.marker_abundance.stool
#' Heitz-BuschartA_2016.marker_presence.stool
#' Heitz-BuschartA_2016.metaphlan_bugs_list.stool
#' Heitz-BuschartA_2016.pathabundance_relab.stool
#' Heitz-BuschartA_2016.pathcoverage.stool
#' HMP_2012.genefamilies_relab.nasalcavity
#' HMP_2012.genefamilies_relab.oralcavity
#' HMP_2012.genefamilies_relab.skin
#' HMP_2012.genefamilies_relab.stool
#' HMP_2012.genefamilies_relab.vagina
#' HMP_2012.marker_abundance.nasalcavity
#' HMP_2012.marker_abundance.oralcavity
#' HMP_2012.marker_abundance.skin
#' HMP_2012.marker_abundance.stool
#' HMP_2012.marker_abundance.vagina
#' HMP_2012.marker_presence.nasalcavity
#' HMP_2012.marker_presence.oralcavity
#' HMP_2012.marker_presence.skin
#' HMP_2012.marker_presence.stool
#' HMP_2012.marker_presence.vagina
#' HMP_2012.metaphlan_bugs_list.nasalcavity
#' HMP_2012.metaphlan_bugs_list.oralcavity
#' HMP_2012.metaphlan_bugs_list.skin
#' HMP_2012.metaphlan_bugs_list.stool
#' HMP_2012.metaphlan_bugs_list.vagina
#' HMP_2012.pathabundance_relab.nasalcavity
#' HMP_2012.pathabundance_relab.oralcavity
#' HMP_2012.pathabundance_relab.skin
#' HMP_2012.pathabundance_relab.stool
#' HMP_2012.pathabundance_relab.vagina
#' HMP_2012.pathcoverage.nasalcavity
#' HMP_2012.pathcoverage.oralcavity
#' HMP_2012.pathcoverage.skin
#' HMP_2012.pathcoverage.stool
#' HMP_2012.pathcoverage.vagina
#' JieZ_2017.genefamilies_relab.stool
#' JieZ_2017.marker_abundance.stool
#' JieZ_2017.marker_presence.stool
#' JieZ_2017.metaphlan_bugs_list.stool
#' JieZ_2017.pathabundance_relab.stool
#' JieZ_2017.pathcoverage.stool
#' KarlssonFH_2013.genefamilies_relab.stool
#' KarlssonFH_2013.marker_abundance.stool
#' KarlssonFH_2013.marker_presence.stool
#' KarlssonFH_2013.metaphlan_bugs_list.stool
#' KarlssonFH_2013.pathabundance_relab.stool
#' KarlssonFH_2013.pathcoverage.stool
#' KieserS_2018.genefamilies_relab.stool
#' KieserS_2018.marker_abundance.stool
#' KieserS_2018.marker_presence.stool
#' KieserS_2018.metaphlan_bugs_list.stool
#' KieserS_2018.pathabundance_relab.stool
#' KieserS_2018.pathcoverage.stool
#' KosticAD_2015.genefamilies_relab.stool
#' KosticAD_2015.marker_abundance.stool
#' KosticAD_2015.marker_presence.stool
#' KosticAD_2015.metaphlan_bugs_list.stool
#' KosticAD_2015.pathabundance_relab.stool
#' KosticAD_2015.pathcoverage.stool
#' LeChatelierE_2013.genefamilies_relab.stool
#' LeChatelierE_2013.marker_abundance.stool
#' LeChatelierE_2013.marker_presence.stool
#' LeChatelierE_2013.metaphlan_bugs_list.stool
#' LeChatelierE_2013.pathabundance_relab.stool
#' LeChatelierE_2013.pathcoverage.stool
#' LiJ_2014.genefamilies_relab.stool
#' LiJ_2014.marker_abundance.stool
#' LiJ_2014.marker_presence.stool
#' LiJ_2014.metaphlan_bugs_list.stool
#' LiJ_2014.pathabundance_relab.stool
#' LiJ_2014.pathcoverage.stool
#' LiJ_2017.genefamilies_relab.stool
#' LiJ_2017.marker_abundance.stool
#' LiJ_2017.marker_presence.stool
#' LiJ_2017.metaphlan_bugs_list.stool
#' LiJ_2017.pathabundance_relab.stool
#' LiJ_2017.pathcoverage.stool
#' LiSS_2016.genefamilies_relab.stool
#' LiSS_2016.marker_abundance.stool
#' LiSS_2016.marker_presence.stool
#' LiSS_2016.metaphlan_bugs_list.stool
#' LiSS_2016.pathabundance_relab.stool
#' LiSS_2016.pathcoverage.stool
#' LiuW_2016.genefamilies_relab.stool
#' LiuW_2016.marker_abundance.stool
#' LiuW_2016.marker_presence.stool
#' LiuW_2016.metaphlan_bugs_list.stool
#' LiuW_2016.pathabundance_relab.stool
#' LiuW_2016.pathcoverage.stool
#' LomanNJ_2013.genefamilies_relab.stool
#' LomanNJ_2013.marker_abundance.stool
#' LomanNJ_2013.marker_presence.stool
#' LomanNJ_2013.metaphlan_bugs_list.stool
#' LomanNJ_2013.pathabundance_relab.stool
#' LomanNJ_2013.pathcoverage.stool
#' LoombaR_2017.genefamilies_relab.stool
#' LoombaR_2017.marker_abundance.stool
#' LoombaR_2017.marker_presence.stool
#' LoombaR_2017.metaphlan_bugs_list.stool
#' LoombaR_2017.pathabundance_relab.stool
#' LoombaR_2017.pathcoverage.stool
#' LouisS_2016.genefamilies_relab.stool
#' LouisS_2016.marker_abundance.stool
#' LouisS_2016.marker_presence.stool
#' LouisS_2016.metaphlan_bugs_list.stool
#' LouisS_2016.pathabundance_relab.stool
#' LouisS_2016.pathcoverage.stool
#' MatsonV_2018.genefamilies_relab.stool
#' MatsonV_2018.marker_abundance.stool
#' MatsonV_2018.marker_presence.stool
#' MatsonV_2018.metaphlan_bugs_list.stool
#' MatsonV_2018.pathabundance_relab.stool
#' MatsonV_2018.pathcoverage.stool
#' NielsenHB_2014.genefamilies_relab.stool
#' NielsenHB_2014.marker_abundance.stool
#' NielsenHB_2014.marker_presence.stool
#' NielsenHB_2014.metaphlan_bugs_list.stool
#' NielsenHB_2014.pathabundance_relab.stool
#' NielsenHB_2014.pathcoverage.stool
#' Obregon_TitoAJ_2015.genefamilies_relab.stool
#' Obregon_TitoAJ_2015.marker_abundance.stool
#' Obregon_TitoAJ_2015.marker_presence.stool
#' Obregon_TitoAJ_2015.metaphlan_bugs_list.stool
#' Obregon_TitoAJ_2015.pathabundance_relab.stool
#' Obregon_TitoAJ_2015.pathcoverage.stool
#' Obregon-TitoAJ_2015.genefamilies_relab.stool
#' Obregon-TitoAJ_2015.marker_abundance.stool
#' Obregon-TitoAJ_2015.marker_presence.stool
#' Obregon-TitoAJ_2015.metaphlan_bugs_list.stool
#' Obregon-TitoAJ_2015.pathabundance_relab.stool
#' Obregon-TitoAJ_2015.pathcoverage.stool
#' OhJ_2014.genefamilies_relab.skin
#' OhJ_2014.marker_abundance.skin
#' OhJ_2014.marker_presence.skin
#' OhJ_2014.metaphlan_bugs_list.skin
#' OhJ_2014.pathabundance_relab.skin
#' OhJ_2014.pathcoverage.skin
#' OlmMR_2017.genefamilies_relab.oralcavity
#' OlmMR_2017.genefamilies_relab.skin
#' OlmMR_2017.genefamilies_relab.stool
#' OlmMR_2017.marker_abundance.oralcavity
#' OlmMR_2017.marker_abundance.skin
#' OlmMR_2017.marker_abundance.stool
#' OlmMR_2017.marker_presence.oralcavity
#' OlmMR_2017.marker_presence.skin
#' OlmMR_2017.marker_presence.stool
#' OlmMR_2017.metaphlan_bugs_list.oralcavity
#' OlmMR_2017.metaphlan_bugs_list.skin
#' OlmMR_2017.metaphlan_bugs_list.stool
#' OlmMR_2017.pathabundance_relab.oralcavity
#' OlmMR_2017.pathabundance_relab.skin
#' OlmMR_2017.pathabundance_relab.stool
#' OlmMR_2017.pathcoverage.oralcavity
#' OlmMR_2017.pathcoverage.skin
#' OlmMR_2017.pathcoverage.stool
#' PasolliE_2018.genefamilies_relab.stool
#' PasolliE_2018.marker_abundance.stool
#' PasolliE_2018.marker_presence.stool
#' PasolliE_2018.metaphlan_bugs_list.stool
#' PasolliE_2018.pathabundance_relab.stool
#' PasolliE_2018.pathcoverage.stool
#' PehrssonE_2016.genefamilies_relab.stool
#' PehrssonE_2016.marker_abundance.stool
#' PehrssonE_2016.marker_presence.stool
#' PehrssonE_2016.metaphlan_bugs_list.stool
#' PehrssonE_2016.pathabundance_relab.stool
#' PehrssonE_2016.pathcoverage.stool
#' QinJ_2012.genefamilies_relab.stool
#' QinJ_2012.marker_abundance.stool
#' QinJ_2012.marker_presence.stool
#' QinJ_2012.metaphlan_bugs_list.stool
#' QinJ_2012.pathabundance_relab.stool
#' QinJ_2012.pathcoverage.stool
#' QinN_2014.genefamilies_relab.stool
#' QinN_2014.marker_abundance.stool
#' QinN_2014.marker_presence.stool
#' QinN_2014.metaphlan_bugs_list.stool
#' QinN_2014.pathabundance_relab.stool
#' QinN_2014.pathcoverage.stool
#' RampelliS_2015.genefamilies_relab.stool
#' RampelliS_2015.marker_abundance.stool
#' RampelliS_2015.marker_presence.stool
#' RampelliS_2015.metaphlan_bugs_list.stool
#' RampelliS_2015.pathabundance_relab.stool
#' RampelliS_2015.pathcoverage.stool
#' RaymondF_2016.genefamilies_relab.stool
#' RaymondF_2016.marker_abundance.stool
#' RaymondF_2016.marker_presence.stool
#' RaymondF_2016.metaphlan_bugs_list.stool
#' RaymondF_2016.pathabundance_relab.stool
#' RaymondF_2016.pathcoverage.stool
#' SchirmerM_2016.genefamilies_relab.stool
#' SchirmerM_2016.marker_abundance.stool
#' SchirmerM_2016.marker_presence.stool
#' SchirmerM_2016.metaphlan_bugs_list.stool
#' SchirmerM_2016.pathabundance_relab.stool
#' SchirmerM_2016.pathcoverage.stool
#' ShiB_2015.genefamilies_relab.oralcavity
#' ShiB_2015.marker_abundance.oralcavity
#' ShiB_2015.marker_presence.oralcavity
#' ShiB_2015.metaphlan_bugs_list.oralcavity
#' ShiB_2015.pathabundance_relab.oralcavity
#' ShiB_2015.pathcoverage.oralcavity
#' SmitsSA_2017.genefamilies_relab.stool
#' SmitsSA_2017.marker_abundance.stool
#' SmitsSA_2017.marker_presence.stool
#' SmitsSA_2017.metaphlan_bugs_list.stool
#' SmitsSA_2017.pathabundance_relab.stool
#' SmitsSA_2017.pathcoverage.stool
#' TettAJ_2016.genefamilies_relab.skin
#' TettAJ_2016.marker_abundance.skin
#' TettAJ_2016.marker_presence.skin
#' TettAJ_2016.metaphlan_bugs_list.skin
#' TettAJ_2016.pathabundance_relab.skin
#' TettAJ_2016.pathcoverage.skin
#' TettAJ_2019_a.genefamilies_relab.stool
#' TettAJ_2019_a.marker_abundance.stool
#' TettAJ_2019_a.marker_presence.stool
#' TettAJ_2019_a.metaphlan_bugs_list.stool
#' TettAJ_2019_a.pathabundance_relab.stool
#' TettAJ_2019_a.pathcoverage.stool
#' TettAJ_2019_b.genefamilies_relab.stool
#' TettAJ_2019_b.marker_abundance.stool
#' TettAJ_2019_b.marker_presence.stool
#' TettAJ_2019_b.metaphlan_bugs_list.stool
#' TettAJ_2019_b.pathabundance_relab.stool
#' TettAJ_2019_b.pathcoverage.stool
#' TettAJ_2019_c.genefamilies_relab.stool
#' TettAJ_2019_c.marker_abundance.stool
#' TettAJ_2019_c.marker_presence.stool
#' TettAJ_2019_c.metaphlan_bugs_list.stool
#' TettAJ_2019_c.pathabundance_relab.stool
#' TettAJ_2019_c.pathcoverage.stool
#' ThomasAM_2018a.genefamilies_relab.stool
#' ThomasAM_2018a.marker_abundance.stool
#' ThomasAM_2018a.marker_presence.stool
#' ThomasAM_2018a.metaphlan_bugs_list.stool
#' ThomasAM_2018a.pathabundance_relab.stool
#' ThomasAM_2018a.pathcoverage.stool
#' ThomasAM_2018b.genefamilies_relab.stool
#' ThomasAM_2018b.marker_abundance.stool
#' ThomasAM_2018b.marker_presence.stool
#' ThomasAM_2018b.metaphlan_bugs_list.stool
#' ThomasAM_2018b.pathabundance_relab.stool
#' ThomasAM_2018b.pathcoverage.stool
#' VatanenT_2016.genefamilies_relab.stool
#' VatanenT_2016.marker_abundance.stool
#' VatanenT_2016.marker_presence.stool
#' VatanenT_2016.metaphlan_bugs_list.stool
#' VatanenT_2016.pathabundance_relab.stool
#' VatanenT_2016.pathcoverage.stool
#' VincentC_2016.genefamilies_relab.stool
#' VincentC_2016.marker_abundance.stool
#' VincentC_2016.marker_presence.stool
#' VincentC_2016.metaphlan_bugs_list.stool
#' VincentC_2016.pathabundance_relab.stool
#' VincentC_2016.pathcoverage.stool
#' VogtmannE_2016.genefamilies_relab.stool
#' VogtmannE_2016.marker_abundance.stool
#' VogtmannE_2016.marker_presence.stool
#' VogtmannE_2016.metaphlan_bugs_list.stool
#' VogtmannE_2016.pathabundance_relab.stool
#' VogtmannE_2016.pathcoverage.stool
#' XieH_2016.genefamilies_relab.stool
#' XieH_2016.marker_abundance.stool
#' XieH_2016.marker_presence.stool
#' XieH_2016.metaphlan_bugs_list.stool
#' XieH_2016.pathabundance_relab.stool
#' XieH_2016.pathcoverage.stool
#' YeZ_2018.genefamilies_relab.stool
#' YeZ_2018.marker_abundance.stool
#' YeZ_2018.marker_presence.stool
#' YeZ_2018.metaphlan_bugs_list.stool
#' YeZ_2018.pathabundance_relab.stool
#' YeZ_2018.pathcoverage.stool
#' YuJ_2015.genefamilies_relab.stool
#' YuJ_2015.marker_abundance.stool
#' YuJ_2015.marker_presence.stool
#' YuJ_2015.metaphlan_bugs_list.stool
#' YuJ_2015.pathabundance_relab.stool
#' YuJ_2015.pathcoverage.stool
#' ZeeviD_2015.genefamilies_relab.stool
#' ZeeviD_2015.marker_abundance.stool
#' ZeeviD_2015.marker_presence.stool
#' ZeeviD_2015.metaphlan_bugs_list.stool
#' ZeeviD_2015.pathabundance_relab.stool
#' ZeeviD_2015.pathcoverage.stool
#' ZellerG_2014.genefamilies_relab.stool
#' ZellerG_2014.marker_abundance.stool
#' ZellerG_2014.marker_presence.stool
#' ZellerG_2014.metaphlan_bugs_list.stool
#' ZellerG_2014.pathabundance_relab.stool
#' ZellerG_2014.pathcoverage.stool
#'
#' @name curatedMetagenomicData-defunct
#'
#' @keywords internal
NULL
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#' Defunct functions in package ‘curatedMetagenomicData’
#'
#' These functions are defunct and no longer available.
#'
#' The following functions (methods) are defunct:
#' * `cmdValidVersions()`
#' * `getMetaphlanTree()`
#' * `ExpressionSet2MRexperiment()`
#' * `ExpressionSet2phyloseq()`
#'
#' The following functions (accessors) are defunct:
#' * `AsnicarF_2017.genefamilies_relab.milk()`
#' * `AsnicarF_2017.genefamilies_relab.stool()`
#' * `AsnicarF_2017.marker_abundance.milk()`
#' * `AsnicarF_2017.marker_abundance.stool()`
#' * `AsnicarF_2017.marker_presence.milk()`
#' * `AsnicarF_2017.marker_presence.stool()`
#' * `AsnicarF_2017.metaphlan_bugs_list.milk()`
#' * `AsnicarF_2017.metaphlan_bugs_list.stool()`
#' * `AsnicarF_2017.pathabundance_relab.milk()`
#' * `AsnicarF_2017.pathabundance_relab.stool()`
#' * `AsnicarF_2017.pathcoverage.milk()`
#' * `AsnicarF_2017.pathcoverage.stool()`
#' * `BackhedF_2015.genefamilies_relab.stool()`
#' * `BackhedF_2015.marker_abundance.stool()`
#' * `BackhedF_2015.marker_presence.stool()`
#' * `BackhedF_2015.metaphlan_bugs_list.stool()`
#' * `BackhedF_2015.pathabundance_relab.stool()`
#' * `BackhedF_2015.pathcoverage.stool()`
#' * `Bengtsson-PalmeJ_2015.genefamilies_relab.stool()`
#' * `Bengtsson-PalmeJ_2015.marker_abundance.stool()`
#' * `Bengtsson-PalmeJ_2015.marker_presence.stool()`
#' * `Bengtsson-PalmeJ_2015.metaphlan_bugs_list.stool()`
#' * `Bengtsson-PalmeJ_2015.pathabundance_relab.stool()`
#' * `Bengtsson-PalmeJ_2015.pathcoverage.stool()`
#' * `BritoIL_2016.genefamilies_relab.oralcavity()`
#' * `BritoIL_2016.genefamilies_relab.stool()`
#' * `BritoIL_2016.marker_abundance.oralcavity()`
#' * `BritoIL_2016.marker_abundance.stool()`
#' * `BritoIL_2016.marker_presence.oralcavity()`
#' * `BritoIL_2016.marker_presence.stool()`
#' * `BritoIL_2016.metaphlan_bugs_list.oralcavity()`
#' * `BritoIL_2016.metaphlan_bugs_list.stool()`
#' * `BritoIL_2016.pathabundance_relab.oralcavity()`
#' * `BritoIL_2016.pathabundance_relab.stool()`
#' * `BritoIL_2016.pathcoverage.oralcavity()`
#' * `BritoIL_2016.pathcoverage.stool()`
#' * `Castro_NallarE_2015.genefamilies_relab.oralcavity()`
#' * `Castro_NallarE_2015.marker_abundance.oralcavity()`
#' * `Castro_NallarE_2015.marker_presence.oralcavity()`
#' * `Castro_NallarE_2015.metaphlan_bugs_list.oralcavity()`
#' * `Castro_NallarE_2015.pathabundance_relab.oralcavity()`
#' * `Castro_NallarE_2015.pathcoverage.oralcavity()`
#' * `Castro-NallarE_2015.genefamilies_relab.oralcavity()`
#' * `Castro-NallarE_2015.marker_abundance.oralcavity()`
#' * `Castro-NallarE_2015.marker_presence.oralcavity()`
#' * `Castro-NallarE_2015.metaphlan_bugs_list.oralcavity()`
#' * `Castro-NallarE_2015.pathabundance_relab.oralcavity()`
#' * `Castro-NallarE_2015.pathcoverage.oralcavity()`
#' * `ChengpingW_2017.genefamilies_relab.stool()`
#' * `ChengpingW_2017.marker_abundance.stool()`
#' * `ChengpingW_2017.marker_presence.stool()`
#' * `ChengpingW_2017.metaphlan_bugs_list.stool()`
#' * `ChengpingW_2017.pathabundance_relab.stool()`
#' * `ChengpingW_2017.pathcoverage.stool()`
#' * `ChngKR_2016.genefamilies_relab.skin()`
#' * `ChngKR_2016.marker_abundance.skin()`
#' * `ChngKR_2016.marker_presence.skin()`
#' * `ChngKR_2016.metaphlan_bugs_list.skin()`
#' * `ChngKR_2016.pathabundance_relab.skin()`
#' * `ChngKR_2016.pathcoverage.skin()`
#' * `CosteaPI_2017.genefamilies_relab.stool()`
#' * `CosteaPI_2017.marker_abundance.stool()`
#' * `CosteaPI_2017.marker_presence.stool()`
#' * `CosteaPI_2017.metaphlan_bugs_list.stool()`
#' * `CosteaPI_2017.pathabundance_relab.stool()`
#' * `CosteaPI_2017.pathcoverage.stool()`
#' * `DavidLA_2015.genefamilies_relab.stool()`
#' * `DavidLA_2015.marker_abundance.stool()`
#' * `DavidLA_2015.marker_presence.stool()`
#' * `DavidLA_2015.metaphlan_bugs_list.stool()`
#' * `DavidLA_2015.pathabundance_relab.stool()`
#' * `DavidLA_2015.pathcoverage.stool()`
#' * `DhakanDB_2019.genefamilies_relab.stool()`
#' * `DhakanDB_2019.marker_abundance.stool()`
#' * `DhakanDB_2019.marker_presence.stool()`
#' * `DhakanDB_2019.metaphlan_bugs_list.stool()`
#' * `DhakanDB_2019.pathabundance_relab.stool()`
#' * `DhakanDB_2019.pathcoverage.stool()`
#' * `FengQ_2015.genefamilies_relab.stool()`
#' * `FengQ_2015.marker_abundance.stool()`
#' * `FengQ_2015.marker_presence.stool()`
#' * `FengQ_2015.metaphlan_bugs_list.stool()`
#' * `FengQ_2015.pathabundance_relab.stool()`
#' * `FengQ_2015.pathcoverage.stool()`
#' * `FerrettiP_2018.genefamilies_relab.oralcavity()`
#' * `FerrettiP_2018.genefamilies_relab.skin()`
#' * `FerrettiP_2018.genefamilies_relab.stool()`
#' * `FerrettiP_2018.genefamilies_relab.vagina()`
#' * `FerrettiP_2018.marker_abundance.oralcavity()`
#' * `FerrettiP_2018.marker_abundance.skin()`
#' * `FerrettiP_2018.marker_abundance.stool()`
#' * `FerrettiP_2018.marker_abundance.vagina()`
#' * `FerrettiP_2018.marker_presence.oralcavity()`
#' * `FerrettiP_2018.marker_presence.skin()`
#' * `FerrettiP_2018.marker_presence.stool()`
#' * `FerrettiP_2018.marker_presence.vagina()`
#' * `FerrettiP_2018.metaphlan_bugs_list.oralcavity()`
#' * `FerrettiP_2018.metaphlan_bugs_list.skin()`
#' * `FerrettiP_2018.metaphlan_bugs_list.stool()`
#' * `FerrettiP_2018.metaphlan_bugs_list.vagina()`
#' * `FerrettiP_2018.pathabundance_relab.oralcavity()`
#' * `FerrettiP_2018.pathabundance_relab.skin()`
#' * `FerrettiP_2018.pathabundance_relab.stool()`
#' * `FerrettiP_2018.pathabundance_relab.vagina()`
#' * `FerrettiP_2018.pathcoverage.oralcavity()`
#' * `FerrettiP_2018.pathcoverage.skin()`
#' * `FerrettiP_2018.pathcoverage.stool()`
#' * `FerrettiP_2018.pathcoverage.vagina()`
#' * `GopalakrishnanV_2018.genefamilies_relab.stool()`
#' * `GopalakrishnanV_2018.marker_abundance.stool()`
#' * `GopalakrishnanV_2018.marker_presence.stool()`
#' * `GopalakrishnanV_2018.metaphlan_bugs_list.stool()`
#' * `GopalakrishnanV_2018.pathabundance_relab.stool()`
#' * `GopalakrishnanV_2018.pathcoverage.stool()`
#' * `HanniganGD_2017.genefamilies_relab.stool()`
#' * `HanniganGD_2017.marker_abundance.stool()`
#' * `HanniganGD_2017.marker_presence.stool()`
#' * `HanniganGD_2017.metaphlan_bugs_list.stool()`
#' * `HanniganGD_2017.pathabundance_relab.stool()`
#' * `HanniganGD_2017.pathcoverage.stool()`
#' * `HansenLBS_2018.genefamilies_relab.stool()`
#' * `HansenLBS_2018.marker_abundance.stool()`
#' * `HansenLBS_2018.marker_presence.stool()`
#' * `HansenLBS_2018.metaphlan_bugs_list.stool()`
#' * `HansenLBS_2018.pathabundance_relab.stool()`
#' * `HansenLBS_2018.pathcoverage.stool()`
#' * `Heitz_BuschartA_2016.genefamilies_relab.stool()`
#' * `Heitz_BuschartA_2016.marker_abundance.stool()`
#' * `Heitz_BuschartA_2016.marker_presence.stool()`
#' * `Heitz_BuschartA_2016.metaphlan_bugs_list.stool()`
#' * `Heitz_BuschartA_2016.pathabundance_relab.stool()`
#' * `Heitz_BuschartA_2016.pathcoverage.stool()`
#' * `Heitz-BuschartA_2016.genefamilies_relab.stool()`
#' * `Heitz-BuschartA_2016.marker_abundance.stool()`
#' * `Heitz-BuschartA_2016.marker_presence.stool()`
#' * `Heitz-BuschartA_2016.metaphlan_bugs_list.stool()`
#' * `Heitz-BuschartA_2016.pathabundance_relab.stool()`
#' * `Heitz-BuschartA_2016.pathcoverage.stool()`
#' * `HMP_2012.genefamilies_relab.nasalcavity()`
#' * `HMP_2012.genefamilies_relab.oralcavity()`
#' * `HMP_2012.genefamilies_relab.skin()`
#' * `HMP_2012.genefamilies_relab.stool()`
#' * `HMP_2012.genefamilies_relab.vagina()`
#' * `HMP_2012.marker_abundance.nasalcavity()`
#' * `HMP_2012.marker_abundance.oralcavity()`
#' * `HMP_2012.marker_abundance.skin()`
#' * `HMP_2012.marker_abundance.stool()`
#' * `HMP_2012.marker_abundance.vagina()`
#' * `HMP_2012.marker_presence.nasalcavity()`
#' * `HMP_2012.marker_presence.oralcavity()`
#' * `HMP_2012.marker_presence.skin()`
#' * `HMP_2012.marker_presence.stool()`
#' * `HMP_2012.marker_presence.vagina()`
#' * `HMP_2012.metaphlan_bugs_list.nasalcavity()`
#' * `HMP_2012.metaphlan_bugs_list.oralcavity()`
#' * `HMP_2012.metaphlan_bugs_list.skin()`
#' * `HMP_2012.metaphlan_bugs_list.stool()`
#' * `HMP_2012.metaphlan_bugs_list.vagina()`
#' * `HMP_2012.pathabundance_relab.nasalcavity()`
#' * `HMP_2012.pathabundance_relab.oralcavity()`
#' * `HMP_2012.pathabundance_relab.skin()`
#' * `HMP_2012.pathabundance_relab.stool()`
#' * `HMP_2012.pathabundance_relab.vagina()`
#' * `HMP_2012.pathcoverage.nasalcavity()`
#' * `HMP_2012.pathcoverage.oralcavity()`
#' * `HMP_2012.pathcoverage.skin()`
#' * `HMP_2012.pathcoverage.stool()`
#' * `HMP_2012.pathcoverage.vagina()`
#' * `JieZ_2017.genefamilies_relab.stool()`
#' * `JieZ_2017.marker_abundance.stool()`
#' * `JieZ_2017.marker_presence.stool()`
#' * `JieZ_2017.metaphlan_bugs_list.stool()`
#' * `JieZ_2017.pathabundance_relab.stool()`
#' * `JieZ_2017.pathcoverage.stool()`
#' * `KarlssonFH_2013.genefamilies_relab.stool()`
#' * `KarlssonFH_2013.marker_abundance.stool()`
#' * `KarlssonFH_2013.marker_presence.stool()`
#' * `KarlssonFH_2013.metaphlan_bugs_list.stool()`
#' * `KarlssonFH_2013.pathabundance_relab.stool()`
#' * `KarlssonFH_2013.pathcoverage.stool()`
#' * `KieserS_2018.genefamilies_relab.stool()`
#' * `KieserS_2018.marker_abundance.stool()`
#' * `KieserS_2018.marker_presence.stool()`
#' * `KieserS_2018.metaphlan_bugs_list.stool()`
#' * `KieserS_2018.pathabundance_relab.stool()`
#' * `KieserS_2018.pathcoverage.stool()`
#' * `KosticAD_2015.genefamilies_relab.stool()`
#' * `KosticAD_2015.marker_abundance.stool()`
#' * `KosticAD_2015.marker_presence.stool()`
#' * `KosticAD_2015.metaphlan_bugs_list.stool()`
#' * `KosticAD_2015.pathabundance_relab.stool()`
#' * `KosticAD_2015.pathcoverage.stool()`
#' * `LeChatelierE_2013.genefamilies_relab.stool()`
#' * `LeChatelierE_2013.marker_abundance.stool()`
#' * `LeChatelierE_2013.marker_presence.stool()`
#' * `LeChatelierE_2013.metaphlan_bugs_list.stool()`
#' * `LeChatelierE_2013.pathabundance_relab.stool()`
#' * `LeChatelierE_2013.pathcoverage.stool()`
#' * `LiJ_2014.genefamilies_relab.stool()`
#' * `LiJ_2014.marker_abundance.stool()`
#' * `LiJ_2014.marker_presence.stool()`
#' * `LiJ_2014.metaphlan_bugs_list.stool()`
#' * `LiJ_2014.pathabundance_relab.stool()`
#' * `LiJ_2014.pathcoverage.stool()`
#' * `LiJ_2017.genefamilies_relab.stool()`
#' * `LiJ_2017.marker_abundance.stool()`
#' * `LiJ_2017.marker_presence.stool()`
#' * `LiJ_2017.metaphlan_bugs_list.stool()`
#' * `LiJ_2017.pathabundance_relab.stool()`
#' * `LiJ_2017.pathcoverage.stool()`
#' * `LiSS_2016.genefamilies_relab.stool()`
#' * `LiSS_2016.marker_abundance.stool()`
#' * `LiSS_2016.marker_presence.stool()`
#' * `LiSS_2016.metaphlan_bugs_list.stool()`
#' * `LiSS_2016.pathabundance_relab.stool()`
#' * `LiSS_2016.pathcoverage.stool()`
#' * `LiuW_2016.genefamilies_relab.stool()`
#' * `LiuW_2016.marker_abundance.stool()`
#' * `LiuW_2016.marker_presence.stool()`
#' * `LiuW_2016.metaphlan_bugs_list.stool()`
#' * `LiuW_2016.pathabundance_relab.stool()`
#' * `LiuW_2016.pathcoverage.stool()`
#' * `LomanNJ_2013.genefamilies_relab.stool()`
#' * `LomanNJ_2013.marker_abundance.stool()`
#' * `LomanNJ_2013.marker_presence.stool()`
#' * `LomanNJ_2013.metaphlan_bugs_list.stool()`
#' * `LomanNJ_2013.pathabundance_relab.stool()`
#' * `LomanNJ_2013.pathcoverage.stool()`
#' * `LoombaR_2017.genefamilies_relab.stool()`
#' * `LoombaR_2017.marker_abundance.stool()`
#' * `LoombaR_2017.marker_presence.stool()`
#' * `LoombaR_2017.metaphlan_bugs_list.stool()`
#' * `LoombaR_2017.pathabundance_relab.stool()`
#' * `LoombaR_2017.pathcoverage.stool()`
#' * `LouisS_2016.genefamilies_relab.stool()`
#' * `LouisS_2016.marker_abundance.stool()`
#' * `LouisS_2016.marker_presence.stool()`
#' * `LouisS_2016.metaphlan_bugs_list.stool()`
#' * `LouisS_2016.pathabundance_relab.stool()`
#' * `LouisS_2016.pathcoverage.stool()`
#' * `MatsonV_2018.genefamilies_relab.stool()`
#' * `MatsonV_2018.marker_abundance.stool()`
#' * `MatsonV_2018.marker_presence.stool()`
#' * `MatsonV_2018.metaphlan_bugs_list.stool()`
#' * `MatsonV_2018.pathabundance_relab.stool()`
#' * `MatsonV_2018.pathcoverage.stool()`
#' * `NielsenHB_2014.genefamilies_relab.stool()`
#' * `NielsenHB_2014.marker_abundance.stool()`
#' * `NielsenHB_2014.marker_presence.stool()`
#' * `NielsenHB_2014.metaphlan_bugs_list.stool()`
#' * `NielsenHB_2014.pathabundance_relab.stool()`
#' * `NielsenHB_2014.pathcoverage.stool()`
#' * `Obregon_TitoAJ_2015.genefamilies_relab.stool()`
#' * `Obregon_TitoAJ_2015.marker_abundance.stool()`
#' * `Obregon_TitoAJ_2015.marker_presence.stool()`
#' * `Obregon_TitoAJ_2015.metaphlan_bugs_list.stool()`
#' * `Obregon_TitoAJ_2015.pathabundance_relab.stool()`
#' * `Obregon_TitoAJ_2015.pathcoverage.stool()`
#' * `Obregon-TitoAJ_2015.genefamilies_relab.stool()`
#' * `Obregon-TitoAJ_2015.marker_abundance.stool()`
#' * `Obregon-TitoAJ_2015.marker_presence.stool()`
#' * `Obregon-TitoAJ_2015.metaphlan_bugs_list.stool()`
#' * `Obregon-TitoAJ_2015.pathabundance_relab.stool()`
#' * `Obregon-TitoAJ_2015.pathcoverage.stool()`
#' * `OhJ_2014.genefamilies_relab.skin()`
#' * `OhJ_2014.marker_abundance.skin()`
#' * `OhJ_2014.marker_presence.skin()`
#' * `OhJ_2014.metaphlan_bugs_list.skin()`
#' * `OhJ_2014.pathabundance_relab.skin()`
#' * `OhJ_2014.pathcoverage.skin()`
#' * `OlmMR_2017.genefamilies_relab.oralcavity()`
#' * `OlmMR_2017.genefamilies_relab.skin()`
#' * `OlmMR_2017.genefamilies_relab.stool()`
#' * `OlmMR_2017.marker_abundance.oralcavity()`
#' * `OlmMR_2017.marker_abundance.skin()`
#' * `OlmMR_2017.marker_abundance.stool()`
#' * `OlmMR_2017.marker_presence.oralcavity()`
#' * `OlmMR_2017.marker_presence.skin()`
#' * `OlmMR_2017.marker_presence.stool()`
#' * `OlmMR_2017.metaphlan_bugs_list.oralcavity()`
#' * `OlmMR_2017.metaphlan_bugs_list.skin()`
#' * `OlmMR_2017.metaphlan_bugs_list.stool()`
#' * `OlmMR_2017.pathabundance_relab.oralcavity()`
#' * `OlmMR_2017.pathabundance_relab.skin()`
#' * `OlmMR_2017.pathabundance_relab.stool()`
#' * `OlmMR_2017.pathcoverage.oralcavity()`
#' * `OlmMR_2017.pathcoverage.skin()`
#' * `OlmMR_2017.pathcoverage.stool()`
#' * `PasolliE_2018.genefamilies_relab.stool()`
#' * `PasolliE_2018.marker_abundance.stool()`
#' * `PasolliE_2018.marker_presence.stool()`
#' * `PasolliE_2018.metaphlan_bugs_list.stool()`
#' * `PasolliE_2018.pathabundance_relab.stool()`
#' * `PasolliE_2018.pathcoverage.stool()`
#' * `PehrssonE_2016.genefamilies_relab.stool()`
#' * `PehrssonE_2016.marker_abundance.stool()`
#' * `PehrssonE_2016.marker_presence.stool()`
#' * `PehrssonE_2016.metaphlan_bugs_list.stool()`
#' * `PehrssonE_2016.pathabundance_relab.stool()`
#' * `PehrssonE_2016.pathcoverage.stool()`
#' * `QinJ_2012.genefamilies_relab.stool()`
#' * `QinJ_2012.marker_abundance.stool()`
#' * `QinJ_2012.marker_presence.stool()`
#' * `QinJ_2012.metaphlan_bugs_list.stool()`
#' * `QinJ_2012.pathabundance_relab.stool()`
#' * `QinJ_2012.pathcoverage.stool()`
#' * `QinN_2014.genefamilies_relab.stool()`
#' * `QinN_2014.marker_abundance.stool()`
#' * `QinN_2014.marker_presence.stool()`
#' * `QinN_2014.metaphlan_bugs_list.stool()`
#' * `QinN_2014.pathabundance_relab.stool()`
#' * `QinN_2014.pathcoverage.stool()`
#' * `RampelliS_2015.genefamilies_relab.stool()`
#' * `RampelliS_2015.marker_abundance.stool()`
#' * `RampelliS_2015.marker_presence.stool()`
#' * `RampelliS_2015.metaphlan_bugs_list.stool()`
#' * `RampelliS_2015.pathabundance_relab.stool()`
#' * `RampelliS_2015.pathcoverage.stool()`
#' * `RaymondF_2016.genefamilies_relab.stool()`
#' * `RaymondF_2016.marker_abundance.stool()`
#' * `RaymondF_2016.marker_presence.stool()`
#' * `RaymondF_2016.metaphlan_bugs_list.stool()`
#' * `RaymondF_2016.pathabundance_relab.stool()`
#' * `RaymondF_2016.pathcoverage.stool()`
#' * `SchirmerM_2016.genefamilies_relab.stool()`
#' * `SchirmerM_2016.marker_abundance.stool()`
#' * `SchirmerM_2016.marker_presence.stool()`
#' * `SchirmerM_2016.metaphlan_bugs_list.stool()`
#' * `SchirmerM_2016.pathabundance_relab.stool()`
#' * `SchirmerM_2016.pathcoverage.stool()`
#' * `ShiB_2015.genefamilies_relab.oralcavity()`
#' * `ShiB_2015.marker_abundance.oralcavity()`
#' * `ShiB_2015.marker_presence.oralcavity()`
#' * `ShiB_2015.metaphlan_bugs_list.oralcavity()`
#' * `ShiB_2015.pathabundance_relab.oralcavity()`
#' * `ShiB_2015.pathcoverage.oralcavity()`
#' * `SmitsSA_2017.genefamilies_relab.stool()`
#' * `SmitsSA_2017.marker_abundance.stool()`
#' * `SmitsSA_2017.marker_presence.stool()`
#' * `SmitsSA_2017.metaphlan_bugs_list.stool()`
#' * `SmitsSA_2017.pathabundance_relab.stool()`
#' * `SmitsSA_2017.pathcoverage.stool()`
#' * `TettAJ_2016.genefamilies_relab.skin()`
#' * `TettAJ_2016.marker_abundance.skin()`
#' * `TettAJ_2016.marker_presence.skin()`
#' * `TettAJ_2016.metaphlan_bugs_list.skin()`
#' * `TettAJ_2016.pathabundance_relab.skin()`
#' * `TettAJ_2016.pathcoverage.skin()`
#' * `TettAJ_2019_a.genefamilies_relab.stool()`
#' * `TettAJ_2019_a.marker_abundance.stool()`
#' * `TettAJ_2019_a.marker_presence.stool()`
#' * `TettAJ_2019_a.metaphlan_bugs_list.stool()`
#' * `TettAJ_2019_a.pathabundance_relab.stool()`
#' * `TettAJ_2019_a.pathcoverage.stool()`
#' * `TettAJ_2019_b.genefamilies_relab.stool()`
#' * `TettAJ_2019_b.marker_abundance.stool()`
#' * `TettAJ_2019_b.marker_presence.stool()`
#' * `TettAJ_2019_b.metaphlan_bugs_list.stool()`
#' * `TettAJ_2019_b.pathabundance_relab.stool()`
#' * `TettAJ_2019_b.pathcoverage.stool()`
#' * `TettAJ_2019_c.genefamilies_relab.stool()`
#' * `TettAJ_2019_c.marker_abundance.stool()`
#' * `TettAJ_2019_c.marker_presence.stool()`
#' * `TettAJ_2019_c.metaphlan_bugs_list.stool()`
#' * `TettAJ_2019_c.pathabundance_relab.stool()`
#' * `TettAJ_2019_c.pathcoverage.stool()`
#' * `ThomasAM_2018a.genefamilies_relab.stool()`
#' * `ThomasAM_2018a.marker_abundance.stool()`
#' * `ThomasAM_2018a.marker_presence.stool()`
#' * `ThomasAM_2018a.metaphlan_bugs_list.stool()`
#' * `ThomasAM_2018a.pathabundance_relab.stool()`
#' * `ThomasAM_2018a.pathcoverage.stool()`
#' * `ThomasAM_2018b.genefamilies_relab.stool()`
#' * `ThomasAM_2018b.marker_abundance.stool()`
#' * `ThomasAM_2018b.marker_presence.stool()`
#' * `ThomasAM_2018b.metaphlan_bugs_list.stool()`
#' * `ThomasAM_2018b.pathabundance_relab.stool()`
#' * `ThomasAM_2018b.pathcoverage.stool()`
#' * `VatanenT_2016.genefamilies_relab.stool()`
#' * `VatanenT_2016.marker_abundance.stool()`
#' * `VatanenT_2016.marker_presence.stool()`
#' * `VatanenT_2016.metaphlan_bugs_list.stool()`
#' * `VatanenT_2016.pathabundance_relab.stool()`
#' * `VatanenT_2016.pathcoverage.stool()`
#' * `VincentC_2016.genefamilies_relab.stool()`
#' * `VincentC_2016.marker_abundance.stool()`
#' * `VincentC_2016.marker_presence.stool()`
#' * `VincentC_2016.metaphlan_bugs_list.stool()`
#' * `VincentC_2016.pathabundance_relab.stool()`
#' * `VincentC_2016.pathcoverage.stool()`
#' * `VogtmannE_2016.genefamilies_relab.stool()`
#' * `VogtmannE_2016.marker_abundance.stool()`
#' * `VogtmannE_2016.marker_presence.stool()`
#' * `VogtmannE_2016.metaphlan_bugs_list.stool()`
#' * `VogtmannE_2016.pathabundance_relab.stool()`
#' * `VogtmannE_2016.pathcoverage.stool()`
#' * `XieH_2016.genefamilies_relab.stool()`
#' * `XieH_2016.marker_abundance.stool()`
#' * `XieH_2016.marker_presence.stool()`
#' * `XieH_2016.metaphlan_bugs_list.stool()`
#' * `XieH_2016.pathabundance_relab.stool()`
#' * `XieH_2016.pathcoverage.stool()`
#' * `YeZ_2018.genefamilies_relab.stool()`
#' * `YeZ_2018.marker_abundance.stool()`
#' * `YeZ_2018.marker_presence.stool()`
#' * `YeZ_2018.metaphlan_bugs_list.stool()`
#' * `YeZ_2018.pathabundance_relab.stool()`
#' * `YeZ_2018.pathcoverage.stool()`
#' * `YuJ_2015.genefamilies_relab.stool()`
#' * `YuJ_2015.marker_abundance.stool()`
#' * `YuJ_2015.marker_presence.stool()`
#' * `YuJ_2015.metaphlan_bugs_list.stool()`
#' * `YuJ_2015.pathabundance_relab.stool()`
#' * `YuJ_2015.pathcoverage.stool()`
#' * `ZeeviD_2015.genefamilies_relab.stool()`
#' * `ZeeviD_2015.marker_abundance.stool()`
#' * `ZeeviD_2015.marker_presence.stool()`
#' * `ZeeviD_2015.metaphlan_bugs_list.stool()`
#' * `ZeeviD_2015.pathabundance_relab.stool()`
#' * `ZeeviD_2015.pathcoverage.stool()`
#' * `ZellerG_2014.genefamilies_relab.stool()`
#' * `ZellerG_2014.marker_abundance.stool()`
#' * `ZellerG_2014.marker_presence.stool()`
#' * `ZellerG_2014.metaphlan_bugs_list.stool()`
#' * `ZellerG_2014.pathabundance_relab.stool()`
#' * `ZellerG_2014.pathcoverage.stool()`
#'
#' @aliases
#' cmdValidVersions
#' getMetaphlanTree
#' ExpressionSet2MRexperiment
#' ExpressionSet2phyloseq
#' AsnicarF_2017.genefamilies_relab.milk
#' AsnicarF_2017.genefamilies_relab.stool
#' AsnicarF_2017.marker_abundance.milk
#' AsnicarF_2017.marker_abundance.stool
#' AsnicarF_2017.marker_presence.milk
#' AsnicarF_2017.marker_presence.stool
#' AsnicarF_2017.metaphlan_bugs_list.milk
#' AsnicarF_2017.metaphlan_bugs_list.stool
#' AsnicarF_2017.pathabundance_relab.milk
#' AsnicarF_2017.pathabundance_relab.stool
#' AsnicarF_2017.pathcoverage.milk
#' AsnicarF_2017.pathcoverage.stool
#' BackhedF_2015.genefamilies_relab.stool
#' BackhedF_2015.marker_abundance.stool
#' BackhedF_2015.marker_presence.stool
#' BackhedF_2015.metaphlan_bugs_list.stool
#' BackhedF_2015.pathabundance_relab.stool
#' BackhedF_2015.pathcoverage.stool
#' Bengtsson-PalmeJ_2015.genefamilies_relab.stool
#' Bengtsson-PalmeJ_2015.marker_abundance.stool
#' Bengtsson-PalmeJ_2015.marker_presence.stool
#' Bengtsson-PalmeJ_2015.metaphlan_bugs_list.stool
#' Bengtsson-PalmeJ_2015.pathabundance_relab.stool
#' Bengtsson-PalmeJ_2015.pathcoverage.stool
#' BritoIL_2016.genefamilies_relab.oralcavity
#' BritoIL_2016.genefamilies_relab.stool
#' BritoIL_2016.marker_abundance.oralcavity
#' BritoIL_2016.marker_abundance.stool
#' BritoIL_2016.marker_presence.oralcavity
#' BritoIL_2016.marker_presence.stool
#' BritoIL_2016.metaphlan_bugs_list.oralcavity
#' BritoIL_2016.metaphlan_bugs_list.stool
#' BritoIL_2016.pathabundance_relab.oralcavity
#' BritoIL_2016.pathabundance_relab.stool
#' BritoIL_2016.pathcoverage.oralcavity
#' BritoIL_2016.pathcoverage.stool
#' Castro_NallarE_2015.genefamilies_relab.oralcavity
#' Castro_NallarE_2015.marker_abundance.oralcavity
#' Castro_NallarE_2015.marker_presence.oralcavity
#' Castro_NallarE_2015.metaphlan_bugs_list.oralcavity
#' Castro_NallarE_2015.pathabundance_relab.oralcavity
#' Castro_NallarE_2015.pathcoverage.oralcavity
#' Castro-NallarE_2015.genefamilies_relab.oralcavity
#' Castro-NallarE_2015.marker_abundance.oralcavity
#' Castro-NallarE_2015.marker_presence.oralcavity
#' Castro-NallarE_2015.metaphlan_bugs_list.oralcavity
#' Castro-NallarE_2015.pathabundance_relab.oralcavity
#' Castro-NallarE_2015.pathcoverage.oralcavity
#' ChengpingW_2017.genefamilies_relab.stool
#' ChengpingW_2017.marker_abundance.stool
#' ChengpingW_2017.marker_presence.stool
#' ChengpingW_2017.metaphlan_bugs_list.stool
#' ChengpingW_2017.pathabundance_relab.stool
#' ChengpingW_2017.pathcoverage.stool
#' ChngKR_2016.genefamilies_relab.skin
#' ChngKR_2016.marker_abundance.skin
#' ChngKR_2016.marker_presence.skin
#' ChngKR_2016.metaphlan_bugs_list.skin
#' ChngKR_2016.pathabundance_relab.skin
#' ChngKR_2016.pathcoverage.skin
#' CosteaPI_2017.genefamilies_relab.stool
#' CosteaPI_2017.marker_abundance.stool
#' CosteaPI_2017.marker_presence.stool
#' CosteaPI_2017.metaphlan_bugs_list.stool
#' CosteaPI_2017.pathabundance_relab.stool
#' CosteaPI_2017.pathcoverage.stool
#' DavidLA_2015.genefamilies_relab.stool
#' DavidLA_2015.marker_abundance.stool
#' DavidLA_2015.marker_presence.stool
#' DavidLA_2015.metaphlan_bugs_list.stool
#' DavidLA_2015.pathabundance_relab.stool
#' DavidLA_2015.pathcoverage.stool
#' DhakanDB_2019.genefamilies_relab.stool
#' DhakanDB_2019.marker_abundance.stool
#' DhakanDB_2019.marker_presence.stool
#' DhakanDB_2019.metaphlan_bugs_list.stool
#' DhakanDB_2019.pathabundance_relab.stool
#' DhakanDB_2019.pathcoverage.stool
#' FengQ_2015.genefamilies_relab.stool
#' FengQ_2015.marker_abundance.stool
#' FengQ_2015.marker_presence.stool
#' FengQ_2015.metaphlan_bugs_list.stool
#' FengQ_2015.pathabundance_relab.stool
#' FengQ_2015.pathcoverage.stool
#' FerrettiP_2018.genefamilies_relab.oralcavity
#' FerrettiP_2018.genefamilies_relab.skin
#' FerrettiP_2018.genefamilies_relab.stool
#' FerrettiP_2018.genefamilies_relab.vagina
#' FerrettiP_2018.marker_abundance.oralcavity
#' FerrettiP_2018.marker_abundance.skin
#' FerrettiP_2018.marker_abundance.stool
#' FerrettiP_2018.marker_abundance.vagina
#' FerrettiP_2018.marker_presence.oralcavity
#' FerrettiP_2018.marker_presence.skin
#' FerrettiP_2018.marker_presence.stool
#' FerrettiP_2018.marker_presence.vagina
#' FerrettiP_2018.metaphlan_bugs_list.oralcavity
#' FerrettiP_2018.metaphlan_bugs_list.skin
#' FerrettiP_2018.metaphlan_bugs_list.stool
#' FerrettiP_2018.metaphlan_bugs_list.vagina
#' FerrettiP_2018.pathabundance_relab.oralcavity
#' FerrettiP_2018.pathabundance_relab.skin
#' FerrettiP_2018.pathabundance_relab.stool
#' FerrettiP_2018.pathabundance_relab.vagina
#' FerrettiP_2018.pathcoverage.oralcavity
#' FerrettiP_2018.pathcoverage.skin
#' FerrettiP_2018.pathcoverage.stool
#' FerrettiP_2018.pathcoverage.vagina
#' GopalakrishnanV_2018.genefamilies_relab.stool
#' GopalakrishnanV_2018.marker_abundance.stool
#' GopalakrishnanV_2018.marker_presence.stool
#' GopalakrishnanV_2018.metaphlan_bugs_list.stool
#' GopalakrishnanV_2018.pathabundance_relab.stool
#' GopalakrishnanV_2018.pathcoverage.stool
#' HanniganGD_2017.genefamilies_relab.stool
#' HanniganGD_2017.marker_abundance.stool
#' HanniganGD_2017.marker_presence.stool
#' HanniganGD_2017.metaphlan_bugs_list.stool
#' HanniganGD_2017.pathabundance_relab.stool
#' HanniganGD_2017.pathcoverage.stool
#' HansenLBS_2018.genefamilies_relab.stool
#' HansenLBS_2018.marker_abundance.stool
#' HansenLBS_2018.marker_presence.stool
#' HansenLBS_2018.metaphlan_bugs_list.stool
#' HansenLBS_2018.pathabundance_relab.stool
#' HansenLBS_2018.pathcoverage.stool
#' Heitz_BuschartA_2016.genefamilies_relab.stool
#' Heitz_BuschartA_2016.marker_abundance.stool
#' Heitz_BuschartA_2016.marker_presence.stool
#' Heitz_BuschartA_2016.metaphlan_bugs_list.stool
#' Heitz_BuschartA_2016.pathabundance_relab.stool
#' Heitz_BuschartA_2016.pathcoverage.stool
#' Heitz-BuschartA_2016.genefamilies_relab.stool
#' Heitz-BuschartA_2016.marker_abundance.stool
#' Heitz-BuschartA_2016.marker_presence.stool
#' Heitz-BuschartA_2016.metaphlan_bugs_list.stool
#' Heitz-BuschartA_2016.pathabundance_relab.stool
#' Heitz-BuschartA_2016.pathcoverage.stool
#' HMP_2012.genefamilies_relab.nasalcavity
#' HMP_2012.genefamilies_relab.oralcavity
#' HMP_2012.genefamilies_relab.skin
#' HMP_2012.genefamilies_relab.stool
#' HMP_2012.genefamilies_relab.vagina
#' HMP_2012.marker_abundance.nasalcavity
#' HMP_2012.marker_abundance.oralcavity
#' HMP_2012.marker_abundance.skin
#' HMP_2012.marker_abundance.stool
#' HMP_2012.marker_abundance.vagina
#' HMP_2012.marker_presence.nasalcavity
#' HMP_2012.marker_presence.oralcavity
#' HMP_2012.marker_presence.skin
#' HMP_2012.marker_presence.stool
#' HMP_2012.marker_presence.vagina
#' HMP_2012.metaphlan_bugs_list.nasalcavity
#' HMP_2012.metaphlan_bugs_list.oralcavity
#' HMP_2012.metaphlan_bugs_list.skin
#' HMP_2012.metaphlan_bugs_list.stool
#' HMP_2012.metaphlan_bugs_list.vagina
#' HMP_2012.pathabundance_relab.nasalcavity
#' HMP_2012.pathabundance_relab.oralcavity
#' HMP_2012.pathabundance_relab.skin
#' HMP_2012.pathabundance_relab.stool
#' HMP_2012.pathabundance_relab.vagina
#' HMP_2012.pathcoverage.nasalcavity
#' HMP_2012.pathcoverage.oralcavity
#' HMP_2012.pathcoverage.skin
#' HMP_2012.pathcoverage.stool
#' HMP_2012.pathcoverage.vagina
#' JieZ_2017.genefamilies_relab.stool
#' JieZ_2017.marker_abundance.stool
#' JieZ_2017.marker_presence.stool
#' JieZ_2017.metaphlan_bugs_list.stool
#' JieZ_2017.pathabundance_relab.stool
#' JieZ_2017.pathcoverage.stool
#' KarlssonFH_2013.genefamilies_relab.stool
#' KarlssonFH_2013.marker_abundance.stool
#' KarlssonFH_2013.marker_presence.stool
#' KarlssonFH_2013.metaphlan_bugs_list.stool
#' KarlssonFH_2013.pathabundance_relab.stool
#' KarlssonFH_2013.pathcoverage.stool
#' KieserS_2018.genefamilies_relab.stool
#' KieserS_2018.marker_abundance.stool
#' KieserS_2018.marker_presence.stool
#' KieserS_2018.metaphlan_bugs_list.stool
#' KieserS_2018.pathabundance_relab.stool
#' KieserS_2018.pathcoverage.stool
#' KosticAD_2015.genefamilies_relab.stool
#' KosticAD_2015.marker_abundance.stool
#' KosticAD_2015.marker_presence.stool
#' KosticAD_2015.metaphlan_bugs_list.stool
#' KosticAD_2015.pathabundance_relab.stool
#' KosticAD_2015.pathcoverage.stool
#' LeChatelierE_2013.genefamilies_relab.stool
#' LeChatelierE_2013.marker_abundance.stool
#' LeChatelierE_2013.marker_presence.stool
#' LeChatelierE_2013.metaphlan_bugs_list.stool
#' LeChatelierE_2013.pathabundance_relab.stool
#' LeChatelierE_2013.pathcoverage.stool
#' LiJ_2014.genefamilies_relab.stool
#' LiJ_2014.marker_abundance.stool
#' LiJ_2014.marker_presence.stool
#' LiJ_2014.metaphlan_bugs_list.stool
#' LiJ_2014.pathabundance_relab.stool
#' LiJ_2014.pathcoverage.stool
#' LiJ_2017.genefamilies_relab.stool
#' LiJ_2017.marker_abundance.stool
#' LiJ_2017.marker_presence.stool
#' LiJ_2017.metaphlan_bugs_list.stool
#' LiJ_2017.pathabundance_relab.stool
#' LiJ_2017.pathcoverage.stool
#' LiSS_2016.genefamilies_relab.stool
#' LiSS_2016.marker_abundance.stool
#' LiSS_2016.marker_presence.stool
#' LiSS_2016.metaphlan_bugs_list.stool
#' LiSS_2016.pathabundance_relab.stool
#' LiSS_2016.pathcoverage.stool
#' LiuW_2016.genefamilies_relab.stool
#' LiuW_2016.marker_abundance.stool
#' LiuW_2016.marker_presence.stool
#' LiuW_2016.metaphlan_bugs_list.stool
#' LiuW_2016.pathabundance_relab.stool
#' LiuW_2016.pathcoverage.stool
#' LomanNJ_2013.genefamilies_relab.stool
#' LomanNJ_2013.marker_abundance.stool
#' LomanNJ_2013.marker_presence.stool
#' LomanNJ_2013.metaphlan_bugs_list.stool
#' LomanNJ_2013.pathabundance_relab.stool
#' LomanNJ_2013.pathcoverage.stool
#' LoombaR_2017.genefamilies_relab.stool
#' LoombaR_2017.marker_abundance.stool
#' LoombaR_2017.marker_presence.stool
#' LoombaR_2017.metaphlan_bugs_list.stool
#' LoombaR_2017.pathabundance_relab.stool
#' LoombaR_2017.pathcoverage.stool
#' LouisS_2016.genefamilies_relab.stool
#' LouisS_2016.marker_abundance.stool
#' LouisS_2016.marker_presence.stool
#' LouisS_2016.metaphlan_bugs_list.stool
#' LouisS_2016.pathabundance_relab.stool
#' LouisS_2016.pathcoverage.stool
#' MatsonV_2018.genefamilies_relab.stool
#' MatsonV_2018.marker_abundance.stool
#' MatsonV_2018.marker_presence.stool
#' MatsonV_2018.metaphlan_bugs_list.stool
#' MatsonV_2018.pathabundance_relab.stool
#' MatsonV_2018.pathcoverage.stool
#' NielsenHB_2014.genefamilies_relab.stool
#' NielsenHB_2014.marker_abundance.stool
#' NielsenHB_2014.marker_presence.stool
#' NielsenHB_2014.metaphlan_bugs_list.stool
#' NielsenHB_2014.pathabundance_relab.stool
#' NielsenHB_2014.pathcoverage.stool
#' Obregon_TitoAJ_2015.genefamilies_relab.stool
#' Obregon_TitoAJ_2015.marker_abundance.stool
#' Obregon_TitoAJ_2015.marker_presence.stool
#' Obregon_TitoAJ_2015.metaphlan_bugs_list.stool
#' Obregon_TitoAJ_2015.pathabundance_relab.stool
#' Obregon_TitoAJ_2015.pathcoverage.stool
#' Obregon-TitoAJ_2015.genefamilies_relab.stool
#' Obregon-TitoAJ_2015.marker_abundance.stool
#' Obregon-TitoAJ_2015.marker_presence.stool
#' Obregon-TitoAJ_2015.metaphlan_bugs_list.stool
#' Obregon-TitoAJ_2015.pathabundance_relab.stool
#' Obregon-TitoAJ_2015.pathcoverage.stool
#' OhJ_2014.genefamilies_relab.skin
#' OhJ_2014.marker_abundance.skin
#' OhJ_2014.marker_presence.skin
#' OhJ_2014.metaphlan_bugs_list.skin
#' OhJ_2014.pathabundance_relab.skin
#' OhJ_2014.pathcoverage.skin
#' OlmMR_2017.genefamilies_relab.oralcavity
#' OlmMR_2017.genefamilies_relab.skin
#' OlmMR_2017.genefamilies_relab.stool
#' OlmMR_2017.marker_abundance.oralcavity
#' OlmMR_2017.marker_abundance.skin
#' OlmMR_2017.marker_abundance.stool
#' OlmMR_2017.marker_presence.oralcavity
#' OlmMR_2017.marker_presence.skin
#' OlmMR_2017.marker_presence.stool
#' OlmMR_2017.metaphlan_bugs_list.oralcavity
#' OlmMR_2017.metaphlan_bugs_list.skin
#' OlmMR_2017.metaphlan_bugs_list.stool
#' OlmMR_2017.pathabundance_relab.oralcavity
#' OlmMR_2017.pathabundance_relab.skin
#' OlmMR_2017.pathabundance_relab.stool
#' OlmMR_2017.pathcoverage.oralcavity
#' OlmMR_2017.pathcoverage.skin
#' OlmMR_2017.pathcoverage.stool
#' PasolliE_2018.genefamilies_relab.stool
#' PasolliE_2018.marker_abundance.stool
#' PasolliE_2018.marker_presence.stool
#' PasolliE_2018.metaphlan_bugs_list.stool
#' PasolliE_2018.pathabundance_relab.stool
#' PasolliE_2018.pathcoverage.stool
#' PehrssonE_2016.genefamilies_relab.stool
#' PehrssonE_2016.marker_abundance.stool
#' PehrssonE_2016.marker_presence.stool
#' PehrssonE_2016.metaphlan_bugs_list.stool
#' PehrssonE_2016.pathabundance_relab.stool
#' PehrssonE_2016.pathcoverage.stool
#' QinJ_2012.genefamilies_relab.stool
#' QinJ_2012.marker_abundance.stool
#' QinJ_2012.marker_presence.stool
#' QinJ_2012.metaphlan_bugs_list.stool
#' QinJ_2012.pathabundance_relab.stool
#' QinJ_2012.pathcoverage.stool
#' QinN_2014.genefamilies_relab.stool
#' QinN_2014.marker_abundance.stool
#' QinN_2014.marker_presence.stool
#' QinN_2014.metaphlan_bugs_list.stool
#' QinN_2014.pathabundance_relab.stool
#' QinN_2014.pathcoverage.stool
#' RampelliS_2015.genefamilies_relab.stool
#' RampelliS_2015.marker_abundance.stool
#' RampelliS_2015.marker_presence.stool
#' RampelliS_2015.metaphlan_bugs_list.stool
#' RampelliS_2015.pathabundance_relab.stool
#' RampelliS_2015.pathcoverage.stool
#' RaymondF_2016.genefamilies_relab.stool
#' RaymondF_2016.marker_abundance.stool
#' RaymondF_2016.marker_presence.stool
#' RaymondF_2016.metaphlan_bugs_list.stool
#' RaymondF_2016.pathabundance_relab.stool
#' RaymondF_2016.pathcoverage.stool
#' SchirmerM_2016.genefamilies_relab.stool
#' SchirmerM_2016.marker_abundance.stool
#' SchirmerM_2016.marker_presence.stool
#' SchirmerM_2016.metaphlan_bugs_list.stool
#' SchirmerM_2016.pathabundance_relab.stool
#' SchirmerM_2016.pathcoverage.stool
#' ShiB_2015.genefamilies_relab.oralcavity
#' ShiB_2015.marker_abundance.oralcavity
#' ShiB_2015.marker_presence.oralcavity
#' ShiB_2015.metaphlan_bugs_list.oralcavity
#' ShiB_2015.pathabundance_relab.oralcavity
#' ShiB_2015.pathcoverage.oralcavity
#' SmitsSA_2017.genefamilies_relab.stool
#' SmitsSA_2017.marker_abundance.stool
#' SmitsSA_2017.marker_presence.stool
#' SmitsSA_2017.metaphlan_bugs_list.stool
#' SmitsSA_2017.pathabundance_relab.stool
#' SmitsSA_2017.pathcoverage.stool
#' TettAJ_2016.genefamilies_relab.skin
#' TettAJ_2016.marker_abundance.skin
#' TettAJ_2016.marker_presence.skin
#' TettAJ_2016.metaphlan_bugs_list.skin
#' TettAJ_2016.pathabundance_relab.skin
#' TettAJ_2016.pathcoverage.skin
#' TettAJ_2019_a.genefamilies_relab.stool
#' TettAJ_2019_a.marker_abundance.stool
#' TettAJ_2019_a.marker_presence.stool
#' TettAJ_2019_a.metaphlan_bugs_list.stool
#' TettAJ_2019_a.pathabundance_relab.stool
#' TettAJ_2019_a.pathcoverage.stool
#' TettAJ_2019_b.genefamilies_relab.stool
#' TettAJ_2019_b.marker_abundance.stool
#' TettAJ_2019_b.marker_presence.stool
#' TettAJ_2019_b.metaphlan_bugs_list.stool
#' TettAJ_2019_b.pathabundance_relab.stool
#' TettAJ_2019_b.pathcoverage.stool
#' TettAJ_2019_c.genefamilies_relab.stool
#' TettAJ_2019_c.marker_abundance.stool
#' TettAJ_2019_c.marker_presence.stool
#' TettAJ_2019_c.metaphlan_bugs_list.stool
#' TettAJ_2019_c.pathabundance_relab.stool
#' TettAJ_2019_c.pathcoverage.stool
#' ThomasAM_2018a.genefamilies_relab.stool
#' ThomasAM_2018a.marker_abundance.stool
#' ThomasAM_2018a.marker_presence.stool
#' ThomasAM_2018a.metaphlan_bugs_list.stool
#' ThomasAM_2018a.pathabundance_relab.stool
#' ThomasAM_2018a.pathcoverage.stool
#' ThomasAM_2018b.genefamilies_relab.stool
#' ThomasAM_2018b.marker_abundance.stool
#' ThomasAM_2018b.marker_presence.stool
#' ThomasAM_2018b.metaphlan_bugs_list.stool
#' ThomasAM_2018b.pathabundance_relab.stool
#' ThomasAM_2018b.pathcoverage.stool
#' VatanenT_2016.genefamilies_relab.stool
#' VatanenT_2016.marker_abundance.stool
#' VatanenT_2016.marker_presence.stool
#' VatanenT_2016.metaphlan_bugs_list.stool
#' VatanenT_2016.pathabundance_relab.stool
#' VatanenT_2016.pathcoverage.stool
#' VincentC_2016.genefamilies_relab.stool
#' VincentC_2016.marker_abundance.stool
#' VincentC_2016.marker_presence.stool
#' VincentC_2016.metaphlan_bugs_list.stool
#' VincentC_2016.pathabundance_relab.stool
#' VincentC_2016.pathcoverage.stool
#' VogtmannE_2016.genefamilies_relab.stool
#' VogtmannE_2016.marker_abundance.stool
#' VogtmannE_2016.marker_presence.stool
#' VogtmannE_2016.metaphlan_bugs_list.stool
#' VogtmannE_2016.pathabundance_relab.stool
#' VogtmannE_2016.pathcoverage.stool
#' XieH_2016.genefamilies_relab.stool
#' XieH_2016.marker_abundance.stool
#' XieH_2016.marker_presence.stool
#' XieH_2016.metaphlan_bugs_list.stool
#' XieH_2016.pathabundance_relab.stool
#' XieH_2016.pathcoverage.stool
#' YeZ_2018.genefamilies_relab.stool
#' YeZ_2018.marker_abundance.stool
#' YeZ_2018.marker_presence.stool
#' YeZ_2018.metaphlan_bugs_list.stool
#' YeZ_2018.pathabundance_relab.stool
#' YeZ_2018.pathcoverage.stool
#' YuJ_2015.genefamilies_relab.stool
#' YuJ_2015.marker_abundance.stool
#' YuJ_2015.marker_presence.stool
#' YuJ_2015.metaphlan_bugs_list.stool
#' YuJ_2015.pathabundance_relab.stool
#' YuJ_2015.pathcoverage.stool
#' ZeeviD_2015.genefamilies_relab.stool
#' ZeeviD_2015.marker_abundance.stool
#' ZeeviD_2015.marker_presence.stool
#' ZeeviD_2015.metaphlan_bugs_list.stool
#' ZeeviD_2015.pathabundance_relab.stool
#' ZeeviD_2015.pathcoverage.stool
#' ZellerG_2014.genefamilies_relab.stool
#' ZellerG_2014.marker_abundance.stool
#' ZellerG_2014.marker_presence.stool
#' ZellerG_2014.metaphlan_bugs_list.stool
#' ZellerG_2014.pathabundance_relab.stool
#' ZellerG_2014.pathcoverage.stool
#'
#' @name curatedMetagenomicData-defunct
#'
#' @keywords internal
NULL
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