NEWS.md
In waldronlab/bugsigdbr: R-side access to published microbial signatures from BugSigDB
bugsigdbr
Changes in version 1.11.4
- Update stable release version for data on Zenodo
Changes in version 1.8.2
- Uniform first-letter capitalization for Body site and Condition terms
Changes in version 1.2.0
importBugSigDB accepts Zenodo DOIs and Github hashes to obtain
defined data releases or devel to obtain the latest version
(new argument version).- Ontology-based queries for experimental factors and body sites
(new functions
getOntology and subsetByOntologies)
- Compilation of meta-signatures from individual signatures for one
body site and one condition at a time, weighted by sample size
(new function
getMetaSignatures)
Version 1.0.0
- released in Bioconductor 3.14!
New features
importBugSigDB: Obtain published microbial signatures from bugsigdb.orggetSignatures: Obtain microbe signatures from BugSigDBrestrictTaxLevel: Restrict microbe signatures to specific taxonomic levelsextractTaxLevel: Extract specific taxonomic levels from a microbe signaturewriteGMT: Write microbe signatures to file in GMT formatbrowseSignature: Displaying BugSigDB signatures pages in a web browserbrowseTaxon: Displaying BugSigDB taxon pages in a web browser
waldronlab/bugsigdbr documentation built on Oct. 31, 2024, 3:43 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
bugsigdbr
Changes in version 1.11.4
- Update stable release version for data on Zenodo
Changes in version 1.8.2
- Uniform first-letter capitalization for Body site and Condition terms
Changes in version 1.2.0
importBugSigDBaccepts Zenodo DOIs and Github hashes to obtain defined data releases ordevelto obtain the latest version (new argumentversion).- Ontology-based queries for experimental factors and body sites
(new functions
getOntologyandsubsetByOntologies) - Compilation of meta-signatures from individual signatures for one
body site and one condition at a time, weighted by sample size
(new function
getMetaSignatures)
Version 1.0.0
- released in Bioconductor 3.14!
New features
importBugSigDB: Obtain published microbial signatures from bugsigdb.orggetSignatures: Obtain microbe signatures from BugSigDBrestrictTaxLevel: Restrict microbe signatures to specific taxonomic levelsextractTaxLevel: Extract specific taxonomic levels from a microbe signaturewriteGMT: Write microbe signatures to file in GMT formatbrowseSignature: Displaying BugSigDB signatures pages in a web browserbrowseTaxon: Displaying BugSigDB taxon pages in a web browser
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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