API for waldronlab/MultiAssayExperimentData
Exposes and Makes Available Data from the cBioPortal Web Resources
| Global functions | |
|---|---|
| .FilterLengthWarn | Source code |
| .TCGAcols | Source code |
| .TCGAsamplesAsCols | Source code |
| .altDownload | Source code |
| .api_header | Source code |
| .bind_content | Source code |
| .biocExtract | Source code |
| .cBioPortal | Man page |
| .cache_exists | Source code |
| .checkSize | Source code |
| .cleanHugo | Source code |
| .cleanStrands | Source code |
| .clinDataCache | Source code |
| .dollarCache | Source code |
| .download_data_file | Source code |
| .findColnames | Source code |
| .findMinDupField | Source code |
| .findUniqueField | Source code |
| .findValidNames | Source code |
| .getAnswer | Source code |
| .getClinMeta | Source code |
| .getGisticData | Source code |
| .getHashCache | Source code |
| .getMixedData | Source code |
| .getMutationData | Source code |
| .getRagEx | Source code |
| .get_build_result | Source code |
| .get_cache | Source code |
| .getcbiodata | Source code |
| .grepFiles | Source code |
| .handle_token | Source code |
| .hasMappers | Source code |
| .invoke_bind | Source code |
| .invoke_fun | Source code |
| .isNonExpData | Source code |
| .is_study_id_building | Source code |
| .loadExperimentsFromFiles | Source code |
| .loadReportData | Source code |
| .manageLocalFile | Source code |
| .molDataCache | Source code |
| .parse_token | Source code |
| .portalExperiments | Source code |
| .preprocess_data | Source code |
| .processMeta | Source code |
| .readAll | Source code |
| .readFUSION | Source code |
| .readGISTIC | Source code |
| .readSeparateMerge | Source code |
| .sampleMolIds | Source code |
| .setBuild | Source code |
| .silentRead | Source code |
| .standardizeBuilds | Source code |
| .subBCLetters | Source code |
| .updateRowData | Source code |
| .validStudyID | Source code |
| .whichMappers | Source code |
| allSamples | Man page Source code |
| cBioCache | Man page Source code |
| cBioDataPack | Man page Source code |
| cBioPortal | Man page Source code |
| cBioPortal-class | Man page |
| cBioPortalData | Man page Source code |
| cbioportal2clinicaldf | Source code |
| cbioportal2metadata | Source code |
| clinicalData | Man page Source code |
| downloadStudy | Man page Source code |
| eval.args | Source code |
| fetchData | Man page Source code |
| genePanelMolecular | Man page Source code |
| genePanels | Man page Source code |
| geneTable | Man page Source code |
| getDataByGenes | Man page Source code |
| getGenePanel | Man page Source code |
| getGenePanelMolecular | Man page Source code |
| getRelevantFilesFromStudy | Source code |
| getSampleInfo | Man page Source code |
| getStudies | Man page Source code |
| loadStudy | Man page Source code |
| match.args | Source code |
| molecularData | Man page Source code |
| molecularProfiles | Man page Source code |
| mutationData | Man page Source code |
| operations,cBioPortal-method | Man page |
| queryGeneTable | Man page Source code |
| removeDataCache | Man page Source code |
| removePackCache | Man page Source code |
| sampleLists | Man page Source code |
| samplesInSampleLists | Man page Source code |
| searchOps | Man page Source code |
| setCache | Man page Source code |
| std.args | Source code |
| untarStudy | Man page Source code |
| update.args | Source code |
