Files in vladpetyuk/MSnID

Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications

R/AllClasses.R R/AllGenerics.R R/MSnID-methods.R R/MSnIDFilter-methods.R R/add_mod_symbol.R R/compute_accession_coverage.R R/extract_sequence_window.R R/fetch_conversion_table.R R/map_mod_sites.R R/map_peptide_position.R R/optimize_filter.r R/plot_protein_coverage.R R/read_mzIDs.R R/remap_accessions-method.R R/remap_fasta_entry_names.R README.md demo/c_elegans.R inst/unitTests/test_apply_filter.R inst/unitTests/test_data_load.R inst/unitTests/test_infer_parsimonious_accessions.R inst/unitTests/test_irreg_cleavages.R inst/unitTests/test_missed_cleavages.R inst/unitTests/test_optimize_filter.R man/MSnID-class.Rd man/MSnID-package.Rd man/MSnIDFilter-class.Rd man/accessions.Rd man/add_mod_symbol.Rd man/apply_filter.Rd man/assess_missed_cleavages.Rd man/assess_termini.Rd man/compute_accession_coverage.Rd man/correct_peak_selection.Rd man/data.Rd man/evaluate_filter.Rd man/extract_sequence_window.Rd man/fetch_conversion_table.Rd man/id_quality.Rd man/infer_parsimonious_accessions.Rd man/map_mod_sites.Rd man/map_peptide_position.Rd man/mass_measurement_error.Rd man/optimize_filter.Rd man/peptides.Rd man/plot_protein_coverage.Rd man/psms.Rd man/read_mzIDs.Rd man/recalibrate.Rd man/remap_accessions-method.Rd man/remap_fasta_entry_names.Rd man/report_mods.Rd tests/runTests.R