R/data.R

In vjcitn/BiocRnaHap: explore RNA-seq based haplotyping using Phaser

#' a table of RNA-based haplotype calls derived from phaser
#' @docType data
#' @source 2019 NHGRI Computational Medicine Hackathon, Martin Steinegger's computations
#' @examples
#' head(NA06986_rnahaps)
"NA06986_rnahaps"

#' a liftover chain instance for hg38->hg19
"ch38to19"

#' a table of RNA-based haplotype calls derived from phaser
"HG00096_rna_haps"

#' a CompressedVcf instance of 2504 genotypes at snps rs2305480, rs2305479 which are near GSDMB
"gsd_vcf"