In vdumeaux/mixtR: Matched Interaction across Tissues (MIxT) data analysis

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

Analysis of Matched Interactions across Tissues

The mixtR package (Matched Interactions across Tissues) contains the computational and statistical methods for identifying and exploring associations between sets of genes or molecular processes across tissues. Learn more in the vignette Introduction to mixtR.

The web application framework is open sourced at http://github.com/fjukstad/mixt and use the mixtApp R wrapper package available at https://github.com/vdumeaux/mixtApp. Learn more in the vignette MIxT web application.

Installation

# Install packages from GitHub
devtools::install_github("vdumeaux/mixtR")
devtools::install_github("vdumeaux/mixtApp")

References

Dumeaux V, Fjukstad B, Lund E, Bongo LA, Hallett M. MIxT: Matched Interaction Across Tissue analysis and visualization (soon on biorxiv).
Dumeaux V, Fjukstad B, Fjosne HE, Frantzen J-O, Holmen MM, Rodegerdts E, Schlichting E, Børresen-Dale AL, Bongo LA, Lund E, Hallett M (2017) Interactions between the tumor and the blood systemic response of breast cancer patients. PLoS Comput Biol 13(9): e1005680.
Fjukstad B, Dumeaux V, Olsen KS, Lund E, Hallett M, and Bongo LA (2017). Building Applications for Interactive Data Exploration in Systems Biology. In Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (Boston, Massachusetts, USA: ACM), pp. 556-561.