Files in vallotlab/IDclust
Iterative Differential Clustering for single-cell
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/IDclust.R
R/data.R
R/differential.R
R/false_positive.R
R/helpers.R
R/interpretation.R
R/plotting.R
R/processing.R
README.md
_pkgdown.yml
data/IDC_DA_scEpigenomics.rda
data/IDC_DA_scRNA.rda
data/IDC_summary_scEpigenomics.rda
data/IDC_summary_scRNA.rda
data/Seu.rda
data/lm_list.rda
data/scExp.rda
docs/404.html
docs/articles/Hackability.html
docs/articles/Hackability_files/bootstrap-3.3.5/css/bootstrap-theme.css
docs/articles/Hackability_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
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man/IDC_DA_scEpigenomics.Rd
man/IDC_DA_scRNA.Rd
man/IDC_summary_scEpigenomics.Rd
man/IDC_summary_scRNA.Rd
man/Seu.Rd
man/add_gene_to_DA_list.Rd
man/calculate_FalseNegative.Rd
man/calculate_FalsePositive.Rd
man/create_pseudobulk_mat.Rd
man/create_pseudobulk_mat.Seurat.Rd
man/create_pseudobulk_mat.default.Rd
man/differential_ChromSCape.Rd
man/differential_Seurat.Rd
man/differential_edgeR_pseudobulk_LRT.Rd
man/differential_edgeR_pseudobulk_LRT.Seurat.Rd
man/differential_edgeR_pseudobulk_LRT.default.Rd
man/differential_pathway.Rd
man/find_differentiated_clusters.Rd
man/iterative_differential_clustering.Rd
man/lm_list.Rd
man/plot_cluster_network.Rd
man/processing_ChromSCape.Rd
man/processing_Seurat.Rd
man/scExp.Rd
man/summarise_DA.Rd
man/top_differential_markers.Rd
man/top_enriched_pathways.Rd
tests/testthat.R
tests/testthat/test_scEpigenomics.R
vignettes/Hackability.Rmd
vignettes/scEpigenomics.Rmd
vignettes/scRNA.Rmd
