plot_violin_feature_scExp: Violin plot of features

In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

Violin plot of features

Description

Violin plot of features

Usage

plot_violin_feature_scExp(
  scExp,
  gene,
  by = c("cell_cluster", "sample_id")[1],
  downsample = 5000,
  max_distanceToTSS = 1000
)

Arguments

scExp	A SingleCellExperiment
gene	A character specifying the gene to plot
by	Color violin by cell_cluster or sample_id ("cell_cluster")
downsample	Downsample for plotting (5000)
max_distanceToTSS	Numeric. Maximum distance to a gene's TSS to consider a region linked to a gene. (1000)

Value

A violin plot of intra-correlation

Examples

data(scExp)
plot_violin_feature_scExp(scExp, "UBXN10")

vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.