plot_differential_volcano_scExp: Volcano plot of differential features

In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

Volcano plot of differential features

Description

Volcano plot of differential features

Usage

plot_differential_volcano_scExp(
  scExp_cf,
  group = "C1",
  logFC.th = 1,
  qval.th = 0.01,
  min.percent = 0.01
)

Arguments

scExp_cf	A SingleCellExperiment object
group	A character indicating the group for which to plot the differential volcano plot. ("C1")
logFC.th	Fold change threshold. (1)
qval.th	Adjusted p-value threshold. (0.01)
min.percent	Minimum fraction of cells having the feature active to consider it as significantly differential. (0.01)

Value

A volcano plot of differential analysis of a specific cluster

Examples

data("scExp")
plot_differential_volcano_scExp(scExp,"C1")

vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.