inst/PhyloProfile/global.R

In trvinh/PhyloProfileRibi: PhyloProfileRibi

#' Startup script for PhyloProfile
#' 1) install and load packages
#' 2) start the PhyloProfile app

source("R/functions.R")

# List of dependent packages --------------------------------------------------
packages <- c(
    "ape", "bioDist", "Biostrings", "colourpicker", "data.table", "energy",
    "GenomeInfoDbData", "ggplot2", "GO.db", "grid", "gridExtra", "RColorBrewer",
    "shiny", "shinyBS", "shinyjs", "OmaDB", "zoo"
)

# Load packages
lapply(packages, library, character.only = TRUE)

# Install ExperimentHub to load demo data sets
# if (!requireNamespace("ExperimentHub"))
#     BiocManager::install("ExperimentHub")
# if (packageVersion("ExperimentHub") < "1.11.1")
#     BiocManager::install(pkgs = "ExperimentHub", version = "devel")
# library(ExperimentHub)
# eh = ExperimentHub()
# myData <- query(eh, "PhyloProfileData")