validMar: Return a logical vector indicating which are valid SNP...

In tomoyukif/GBScleanR: Error correction tool for noisy genotyping by sequencing (GBS) data

Return a logical vector indicating which are valid SNP markers.

Description

Return a logical vector indicating which are valid SNP markers.

Usage

validMar(object, chr = NULL, ...)

validMar(object) <- value

## S4 method for signature 'GbsrGenotypeData'
validMar(object, chr)

## S4 replacement method for signature 'GbsrGenotypeData'
validMar(object) <- value

Arguments

object	A GbsrGenotypeData object.
chr	A index to spefcify chromosome to get information.
...	Unused.
value	A logical vector indicating valid markers with the length matching with the number of markers.

Value

A logical vector of the same length with the number of total SNP markers

Examples

# Load data in the GDS file and instantiate a [GbsrGenotypeData] object.
gds_fn <- system.file("extdata", "sample.gds", package = "GBScleanR")
gds <- loadGDS(gds_fn)

validMar(gds)

# Close the connection to the GDS file.
closeGDS(gds)

tomoyukif/GBScleanR documentation built on Oct. 31, 2024, 2:43 a.m.