R/data.R

In tidytranscriptomics-workshops/rpharma2021_tidytranscriptomics: Introduction to Tidy Transcriptomics

#' BRCA
#'
#' Subset of the TCGA BRCA data set
#'
#' @format  A tidy data frame.
#' @usage data(BRCA)
"BRCA"

#' pbmc
#'
#' A SingleCellExperiment dataset of single cell RNA sequencing data
#'
#'
#' @format  A SingleCellExperiment object.
#' @usage data(pbmc)
"pbmc"

#' a subset version of pbmc in seurat format
#'
#' A Seurat dataset of single cell RNA sequencing data
#'
#'
#' @format  A Seurat object.
#' @usage data(pbmc_seurat)
"pbmc_seurat"

#' pbmc_mito_info_all_datasets
#'
#' A SingleCellExperiment dataset of single cell RNA sequencing data. Used for one of the exercises
#'
#'
#' @format  A SingleCellExperiment object.
#' @usage data(pbmc_mito_info_all_datasets)
"pbmc_mito_info_all_datasets"