R/globals.R

In taxonomicallyinformedannotation/tima-r: Taxonomically Informed Metabolite Annotation

utils::globalVariables(
  c(
    ":=",
    "!!",
    "adduct",
    "adduct.x",
    "adduct.y",
    "adduct_dest",
    "candidate_adduct",
    "candidate_count_similarity_peaks_matched",
    "candidate_library",
    "candidate_organism_01_domain",
    "candidate_organism_02_kingdom",
    "candidate_organism_03_phylum",
    "candidate_organism_04_class",
    "candidate_organism_05_order",
    "candidate_organism_06_family",
    "candidate_organism_07_tribe",
    "candidate_organism_08_genus",
    "candidate_organism_09_species",
    "candidate_organism_10_varietas",
    "candidate_score_pseudo_initial",
    "candidate_score_similarity",
    "candidate_score_sirius_csi",
    "candidate_score_sirius_csi_tmp",
    "candidate_spectrum_entropy",
    "candidate_structure_error_mz",
    "candidate_structure_error_rt",
    "candidate_structure_exact_mass",
    "candidate_structure_exact_mass_i",
    "candidate_structure_exact_mass_s",
    "candidate_structure_inchi",
    "candidate_structure_inchikey_no_stereo",
    "candidate_structure_inchikey_no_stereo_i",
    "candidate_structure_inchikey_no_stereo_s",
    "candidate_structure_molecular_formula",
    "candidate_structure_molecular_formula_i",
    "candidate_structure_molecular_formula_s",
    "candidate_structure_name",
    "candidate_structure_name_i",
    "candidate_structure_name_s",
    "candidate_structure_organism_occurrence_reference",
    "candidate_structure_smiles_no_stereo",
    "candidate_structure_smiles_no_stereo_i",
    "candidate_structure_smiles_no_stereo_s",
    "candidate_structure_tax_cla_chemontid",
    "candidate_structure_tax_cla_chemontid_i",
    "candidate_structure_tax_cla_chemontid_s",
    "candidate_structure_tax_cla_01kin",
    "candidate_structure_tax_cla_01kin_i",
    "candidate_structure_tax_cla_01kin_s",
    "candidate_structure_tax_cla_02sup",
    "candidate_structure_tax_cla_02sup_i",
    "candidate_structure_tax_cla_02sup_s",
    "candidate_structure_tax_cla_03cla",
    "candidate_structure_tax_cla_03cla_i",
    "candidate_structure_tax_cla_03cla_s",
    "candidate_structure_tax_cla_04dirpar",
    "candidate_structure_tax_cla_04dirpar_i",
    "candidate_structure_tax_cla_04dirpar_s",
    "candidate_structure_tax_npc_01pat",
    "candidate_structure_tax_npc_01pat_i",
    "candidate_structure_tax_npc_01pat_s",
    "candidate_structure_tax_npc_02sup",
    "candidate_structure_tax_npc_02sup_i",
    "candidate_structure_tax_npc_02sup_s",
    "candidate_structure_tax_npc_03cla",
    "candidate_structure_tax_npc_03cla_i",
    "candidate_structure_tax_npc_03cla_s",
    "candidate_structure_xlogp",
    "candidate_structure_xlogp_i",
    "candidate_structure_xlogp_s",
    "canonical_name",
    "cluster",
    "cluster index",
    "ComponentIndex",
    "componentindex",
    "compound_id",
    "consistency_structure_cla_cla",
    "consistency_structure_cla_kin",
    "consistency_structure_cla_par",
    "consistency_structure_cla_sup",
    "consistency_structure_npc_cla",
    "consistency_structure_npc_pat",
    "consistency_structure_npc_sup",
    "count",
    "delta_max",
    "delta_min",
    "Distance",
    "error_mz",
    "exactmass",
    "exact_mass",
    "feature_id",
    "feature_id.x",
    "feature_id.y",
    "feature_id_dest",
    "feature_pred_tax_cla_01kin_val",
    "feature_pred_tax_cla_01kin_score",
    "feature_pred_tax_cla_02sup_val",
    "feature_pred_tax_cla_02sup_score",
    "feature_pred_tax_cla_03cla_val",
    "feature_pred_tax_cla_03cla_score",
    "feature_pred_tax_cla_04dirpar_val",
    "feature_pred_tax_cla_04dirpar_score",
    "feature_pred_tax_npc_01pat_val",
    "feature_pred_tax_npc_01pat_score",
    "feature_pred_tax_npc_02sup_val",
    "feature_pred_tax_npc_02sup_score",
    "feature_pred_tax_npc_03cla_val",
    "feature_pred_tax_npc_03cla_score",
    "feature_source",
    "feature_spectrum_entropy",
    "feature_spectrum_peaks",
    "feature_target",
    "filename",
    "formula",
    "Group1",
    "Group2",
    "id",
    "inchikey",
    "inchikey_no_stereo",
    "intensity",
    "ionMass",
    "Item1",
    "Item2",
    "join",
    "l",
    "label",
    "Label",
    "library_name",
    "loss",
    "mappingFeatureId",
    "mass",
    "mass_max",
    "mass_min",
    "massErrorPrecursor(ppm)",
    "moldb_formula",
    "moldb_inchikey",
    "moldb_logp",
    "moldb_mono_mass",
    "moldb_smiles",
    "mz",
    "mz.x",
    "mz.y",
    "mz_dest",
    "MZErrorPPM",
    "n",
    "name",
    "on",
    "organism",
    "organism_name",
    "organism_taxonomy_01domain",
    "organism_taxonomy_02kingdom",
    "organism_taxonomy_03phylum",
    "organism_taxonomy_04class",
    "organism_taxonomy_05order",
    "organism_taxonomy_06family",
    "organism_taxonomy_07tribe",
    "organism_taxonomy_08genus",
    "organism_taxonomy_09species",
    "organism_taxonomy_10varietas",
    "organism_taxonomy_ottid",
    "ott_id",
    "output",
    "precursorMz",
    "Precursor_MZ",
    "rank_final",
    "reference_doi",
    "rowname",
    "rt",
    "rt_max",
    "rt_min",
    "rt_target",
    "rt.x",
    "sample_organism_01_domain",
    "sample_organism_02_kingdom",
    "sample_organism_03_phylum",
    "sample_organism_04_class",
    "sample_organism_05_order",
    "sample_organism_06_family",
    "sample_organism_07_tribe",
    "sample_organism_08_genus",
    "sample_organism_09_species",
    "sample_organism_10_varietas",
    "score_biological",
    "score_biological_01",
    "score_biological_02",
    "score_biological_03",
    "score_biological_04",
    "score_biological_05",
    "score_biological_06",
    "score_biological_07",
    "score_biological_08",
    "score_biological_09",
    "score_biological_10",
    "score_chemical",
    "score_chemical_1",
    "score_chemical_2",
    "score_chemical_3",
    "score_chemical_4",
    "score_chemical_5",
    "score_chemical_6",
    "score_chemical_7",
    "score_weighted_bio",
    "score_weighted_chemo",
    "search_string",
    "selection",
    "smiles",
    "smiles_no_stereo",
    "spectrum_id",
    "structure_exact_mass",
    "structure_inchikey",
    "structure_inchikey_2D",
    "structure_inchikey_no_stereo",
    "structure_molecular_formula",
    "structure_name",
    "structure_nameTraditional",
    "structure_smiles",
    "structure_smiles_2D",
    "structure_smiles_no_stereo",
    "structure_tax_cla_01kin",
    "structure_tax_cla_02sup",
    "structure_tax_cla_03cla",
    "structure_tax_cla_04dirpar",
    "structure_tax_cla_chemontid",
    "structure_tax_npc_01pat",
    "structure_tax_npc_02sup",
    "structure_tax_npc_03cla",
    "structure_taxonomy_classyfire_chemontid",
    "structure_taxonomy_classyfire_01kingdom",
    "structure_taxonomy_classyfire_02superclass",
    "structure_taxonomy_classyfire_03class",
    "structure_taxonomy_classyfire_04directparent",
    "structure_taxonomy_npclassifier_01pathway",
    "structure_taxonomy_npclassifier_02superclass",
    "structure_taxonomy_npclassifier_03class",
    "structure_xlogp",
    "target_id",
    "target_inchikey",
    "target_inchikey_no_stereo",
    "target_precursorMz",
    "target_smiles",
    "target_smiles_no_stereo",
    "type",
    "unique_name",
    "val",
    "value",
    "value_max",
    "value_min"
  )
)