Files in systemPipeR/systemPipeTools
Tools for data visualization
.Rbuildignore
.github/workflows/actions.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/GLMplot.R
R/MAplot.R
R/MDSplot.R
R/PCAplot.R
R/exploreDDS.R
R/exploreDDSplot.R
R/hclustplot.R
R/heatMaplot.R
R/tSNEplot.R
R/utilities.R
R/volcanoplot.R
README.md
_pkgdown.yml
codecov.yml
docs/404.html
docs/articles/SPtools.html
docs/articles/SPtools_files/crosstalk-1.1.1/css/crosstalk.css
docs/articles/SPtools_files/crosstalk-1.1.1/js/crosstalk.js
docs/articles/SPtools_files/crosstalk-1.1.1/js/crosstalk.js.map
docs/articles/SPtools_files/crosstalk-1.1.1/js/crosstalk.min.js
docs/articles/SPtools_files/crosstalk-1.1.1/js/crosstalk.min.js.map
docs/articles/SPtools_files/datatables-binding-0.18/datatables.js
docs/articles/SPtools_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/SPtools_files/dt-core-1.10.20/css/jquery.dataTables.extra.css
docs/articles/SPtools_files/dt-core-1.10.20/css/jquery.dataTables.min.css
docs/articles/SPtools_files/dt-core-1.10.20/js/jquery.dataTables.min.js
docs/articles/SPtools_files/dt-ext-fixedcolumns-1.10.20/css/fixedColumns.dataTables.min.css
docs/articles/SPtools_files/dt-ext-fixedcolumns-1.10.20/js/dataTables.fixedColumns.min.js
docs/articles/SPtools_files/dt-ext-scroller-1.10.20/css/scroller.dataTables.min.css
docs/articles/SPtools_files/dt-ext-scroller-1.10.20/js/dataTables.scroller.min.js
docs/articles/SPtools_files/figure-html/GLMplot-1.png
docs/articles/SPtools_files/figure-html/GLMplot-2.png
docs/articles/SPtools_files/figure-html/MAplot-1.png
docs/articles/SPtools_files/figure-html/MDSplot-1.png
docs/articles/SPtools_files/figure-html/PCAplot-1.png
docs/articles/SPtools_files/figure-html/PCAplot-2.png
docs/articles/SPtools_files/figure-html/exploreDDSplot-1.png
docs/articles/SPtools_files/figure-html/exploreDDSplot-2.png
docs/articles/SPtools_files/figure-html/hclustplot-1.png
docs/articles/SPtools_files/figure-html/hclustplot-2.png
docs/articles/SPtools_files/figure-html/heatMaplot_DEG-1.png
docs/articles/SPtools_files/figure-html/heatMaplot_DEG-2.png
docs/articles/SPtools_files/figure-html/heatMaplot_samples-1.png
docs/articles/SPtools_files/figure-html/tSNEplot-1.png
docs/articles/SPtools_files/figure-html/volcanoplot-1.png
docs/articles/SPtools_files/header-attrs-2.7/header-attrs.js
docs/articles/SPtools_files/htmlwidgets-1.5.3/htmlwidgets.js
docs/articles/SPtools_files/jquery-3.5.1/jquery-AUTHORS.txt
docs/articles/SPtools_files/jquery-3.5.1/jquery.js
docs/articles/SPtools_files/jquery-3.5.1/jquery.min.js
docs/articles/SPtools_files/jquery-3.5.1/jquery.min.map
docs/articles/SPtools_files/plotly-binding-4.9.3/plotly.js
docs/articles/SPtools_files/plotly-htmlwidgets-css-1.57.1/plotly-htmlwidgets.css
docs/articles/SPtools_files/plotly-main-1.57.1/plotly-latest.min.js
docs/articles/SPtools_files/typedarray-0.1/typedarray.min.js
docs/articles/index.html
docs/articles/systemPipeR_dataViz.html
docs/articles/systemPipeR_dataViz_files/header-attrs-2.7/header-attrs.js
docs/articles/systemPipeTools.html
docs/articles/systemPipeTools_files/crosstalk-1.1.1/css/crosstalk.css
docs/articles/systemPipeTools_files/crosstalk-1.1.1/js/crosstalk.js
docs/articles/systemPipeTools_files/crosstalk-1.1.1/js/crosstalk.js.map
docs/articles/systemPipeTools_files/crosstalk-1.1.1/js/crosstalk.min.js
docs/articles/systemPipeTools_files/crosstalk-1.1.1/js/crosstalk.min.js.map
docs/articles/systemPipeTools_files/datatables-binding-0.18/datatables.js
docs/articles/systemPipeTools_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/systemPipeTools_files/dt-core-1.10.20/css/jquery.dataTables.extra.css
docs/articles/systemPipeTools_files/dt-core-1.10.20/css/jquery.dataTables.min.css
docs/articles/systemPipeTools_files/dt-core-1.10.20/js/jquery.dataTables.min.js
docs/articles/systemPipeTools_files/dt-ext-fixedcolumns-1.10.20/css/fixedColumns.dataTables.min.css
docs/articles/systemPipeTools_files/dt-ext-fixedcolumns-1.10.20/js/dataTables.fixedColumns.min.js
docs/articles/systemPipeTools_files/dt-ext-scroller-1.10.20/css/scroller.dataTables.min.css
docs/articles/systemPipeTools_files/dt-ext-scroller-1.10.20/js/dataTables.scroller.min.js
docs/articles/systemPipeTools_files/figure-html/GLMplot-1.png
docs/articles/systemPipeTools_files/figure-html/MAplot-1.png
docs/articles/systemPipeTools_files/figure-html/MDSplot-1.png
docs/articles/systemPipeTools_files/figure-html/PCAplot-1.png
docs/articles/systemPipeTools_files/figure-html/exploreDDSplot-1.png
docs/articles/systemPipeTools_files/figure-html/hclustplot-1.png
docs/articles/systemPipeTools_files/figure-html/heatMaplot_DEG-1.png
docs/articles/systemPipeTools_files/figure-html/heatMaplot_DEG-2.png
docs/articles/systemPipeTools_files/figure-html/heatMaplot_samples-1.png
docs/articles/systemPipeTools_files/figure-html/tSNEplot-1.png
docs/articles/systemPipeTools_files/figure-html/volcanoplot-1.png
docs/articles/systemPipeTools_files/header-attrs-2.7.12/header-attrs.js
docs/articles/systemPipeTools_files/header-attrs-2.7/header-attrs.js
docs/articles/systemPipeTools_files/header-attrs-2.8/header-attrs.js
docs/articles/systemPipeTools_files/htmlwidgets-1.5.3/htmlwidgets.js
docs/articles/systemPipeTools_files/jquery-3.5.1/jquery-AUTHORS.txt
docs/articles/systemPipeTools_files/jquery-3.5.1/jquery.js
docs/articles/systemPipeTools_files/jquery-3.5.1/jquery.min.js
docs/articles/systemPipeTools_files/jquery-3.5.1/jquery.min.map
docs/articles/systemPipeTools_files/plotly-binding-4.9.3/plotly.js
docs/articles/systemPipeTools_files/plotly-htmlwidgets-css-1.57.1/plotly-htmlwidgets.css
docs/articles/systemPipeTools_files/plotly-main-1.57.1/plotly-latest.min.js
docs/articles/systemPipeTools_files/typedarray-0.1/typedarray.min.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/GLM.pdf
docs/reference/GLMplot-1.png
docs/reference/GLMplot.html
docs/reference/MAplot-1.png
docs/reference/MAplot-2.png
docs/reference/MAplot.html
docs/reference/MDSplot-1.png
docs/reference/MDSplot.html
docs/reference/PCAplot-1.png
docs/reference/PCAplot-2.png
docs/reference/PCAplot.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/Rplot004.png
docs/reference/Rplot005.png
docs/reference/Rplot006.png
docs/reference/Rplot007.png
docs/reference/Rplot008.png
docs/reference/cor.pdf
docs/reference/dataViz-1.png
docs/reference/dataViz-2.png
docs/reference/dataViz-3.png
docs/reference/dataViz-4.png
docs/reference/dataViz-5.png
docs/reference/dataViz-6.png
docs/reference/dataViz-7.png
docs/reference/dataViz-8.png
docs/reference/dataViz.html
docs/reference/exploreDDS.html
docs/reference/exploreDDSplot-1.png
docs/reference/exploreDDSplot-2.png
docs/reference/exploreDDSplot-3.png
docs/reference/exploreDDSplot.html
docs/reference/hclustplot-1.png
docs/reference/hclustplot-2.png
docs/reference/hclustplot.html
docs/reference/heatMaplot-1.png
docs/reference/heatMaplot-2.png
docs/reference/heatMaplot-3.png
docs/reference/heatMaplot.html
docs/reference/index.html
docs/reference/pca.pdf
docs/reference/showDT.html
docs/reference/tSNEplot-1.png
docs/reference/tSNEplot.html
docs/reference/transf_deseq2.pdf
docs/reference/volcanoplot-1.png
docs/reference/volcanoplot-2.png
docs/reference/volcanoplot-3.png
docs/reference/volcanoplot.html
docs/sitemap.xml
man/GLMplot.Rd
man/MAplot.Rd
man/MDSplot.Rd
man/PCAplot.Rd
man/exploreDDS.Rd
man/exploreDDSplot.Rd
man/hclustplot.Rd
man/heatMaplot.Rd
man/showDT.Rd
man/tSNEplot.Rd
man/volcanoplot.Rd
tests/testthat.R
tests/testthat/test-systemPipeTools.R
vignettes/bibtex.bib
vignettes/systemPipeTools.Rmd
