tests_in_progress/test-datasheet-functions.R
In syncrosim/rsyncrosim: The R Interface to 'SyncroSim'
### ApexRMS
### 2024-07-11
### Below script tests the following functions:
### * datasheet
### * datasheetSpatRaster
### * saveDatasheet
# Setup ----
library(terra)
myLibraryPath <- "C:/gitprojects/rsyncrosim/tests_in_progress/test_library/spatial-example.ssim"
mySession <- session("C:/gitprojects/ssimbin3/")
# Tests ----
# Load existing library and runnable scenarios (14, 16)
myLib <- ssimLibrary(myLibraryPath, session = mySession)
myProj <- rsyncrosim::project(myLib, project=1)
myScn <- scenario(myProj, scenario = 14)
mySpatialScn <- scenario(myProj, scenario = 16)
mySpatialResultsScn <- scenario(myProj, scenario = 101)
# Test getting lists of datasheets for each ssimObject
datasheet(myLib)
datasheet(myProj)
datasheet(myScn)
# Load a library datasheet
mpDS <- datasheet(myLib, "core_Multiprocessing")
# Test modifying and saving
mpDS$EnableMultiScenario <- FALSE
saveDatasheet(myLib, mpDS, "core_Multiprocessing")
datasheet(myLib, "core_Multiprocessing")
# Load a project datasheet
terminology <- datasheet(myProj, "stsim_Terminology")
str(terminology)
levels(terminology$AmountUnits)
terminology$AmountUnits <- "acres"
saveDatasheet(myProj, terminology, "stsim_Terminology")
terminologyNoFactors <- datasheet(myProj, "stsim_Terminology", lookupsAsFactors = F)
str(terminologyNoFactors)
datasheet(myProj, "stsim_StateClass", summary = T, optional = T)
datasheet(myProj, name = "core_DistributionType")
datasheet(myProj, name = "core_DistributionType", returnInvisible = T)
# Load scenario datasheet
pipeline <- datasheet(myScn, name = "core_Pipeline")
str(pipeline)
datasheet(myScn, name = "stsim_Transition", includeKey = T)
datasheet(myScn, name = "stsim_Transition", optional =T)
datasheet(myScn, name = "stsim_Transition", returnScenarioInfo = T) # broken
# Load spatial data
ics <- datasheet(mySpatialScn, "stsim_InitialConditionsSpatial")
ics$AgeFileName
r <- datasheetSpatRaster(mySpatialScn, "stsim_InitialConditionsSpatial",
column = "AgeFileName")
plot(r)
outputStates <- datasheet(mySpatialResultsScn, "stsim_OutputSpatialState")
outputStates
r <- datasheetSpatRaster(mySpatialResultsScn,
"stsim_OutputSpatialState",
column = "Filename")
plot(r)
r <- datasheetSpatRaster(mySpatialResultsScn,
"stsim_OutputSpatialState",
column = "Filename",
iteration = 2)
plot(r)
r <- datasheetSpatRaster(mySpatialResultsScn,
"stsim_OutputSpatialState",
column = "Filename",
iteration = 2,
timestep = 2004)
plot(r)
# Old code below for datasheet ----
mySession <- session()
installPackage("helloworldSpatial")
myLibraryName <- file.path(tempdir(),"testlib_datasheet")
myLibrary <- ssimLibrary(name = myLibraryName,
session = mySession,
package = "helloworldSpatial",
forceUpdate = TRUE,
overwrite = TRUE)
myProject <- project(myLibrary, project = "Definitions")
myScenario <- scenario(myProject, scenario = "My Scenario")
mySQL <- (sqlStatement(groupBy = c("ScenarioId"), aggregate = c("MinimumTimestep"), where = list(MinimumTimestep = c(1))))
test_that("no errors", {
expect_error(datasheet(myScenario), NA)
expect_error((datasheet(myScenario, name = NULL, summary = TRUE, optional = FALSE,
empty = FALSE, filterColumn = NULL, filterValue = NULL,
lookupsAsFactors = TRUE, includeKey = FALSE, forceElements = FALSE,
fastQuery = FALSE)), NA)
expect_error((datasheet(myProject, summary = FALSE)), NA)
expect_error((datasheet(myScenario, name = "RunControl", includeKey = TRUE, summary = "TRUE", optional = TRUE)), NA)
#expect_error((datasheet(myScenario, name = "RunControl", forceElements = TRUE, fastQuery = TRUE)), NA)
expect_error((datasheet(myScenario, name = "RunControl", empty = TRUE, lookupsAsFactors = FALSE)), NA)
expect_error((datasheet(myScenario, name = "RunControl", sqlStatement = mySQL)), NA)
expect_error((datasheet(myLibrary, summary = "CORE")), NA)
expect_error((datasheet(myLibrary, name = "core_Backup")), NA)
expect_error((datasheet(myScenario, summary = FALSE, empty = FALSE, lookupsAsFactors = FALSE, optional = FALSE)), NA)
})
test_that("correct statements ignored", {
expect_equal(datasheet(myScenario), (datasheet(myScenario, name = NULL, summary = TRUE, optional = FALSE,
empty = FALSE, filterColumn = NULL, filterValue = NULL,
lookupsAsFactors = TRUE, includeKey = FALSE, forceElements = FALSE,
fastQuery = FALSE)))
expect_equal((datasheet(myScenario, name = NULL, summary = TRUE, optional = FALSE,
empty = FALSE, filterColumn = NULL, filterValue = NULL,
lookupsAsFactors = TRUE, includeKey = FALSE, forceElements = FALSE,
fastQuery = FALSE)), datasheet(myScenario, name = NULL, summary = TRUE, optional = FALSE,
empty = TRUE, filterColumn = NULL, filterValue = NULL,
lookupsAsFactors = FALSE, includeKey = FALSE, forceElements = TRUE,
fastQuery = TRUE))
#expect_equal((datasheet(myScenario, summary = FALSE, empty = FALSE, lookupsAsFactors = FALSE, optional = FALSE)), datasheet(myScenario, summary = FALSE, empty = FALSE, lookupsAsFactors = FALSE, optional = TRUE))
})
test_that("errors work", {
expect_error(datasheet("myScenario"))
expect_error(datasheet(myScenario, name = c(1,2,3)))
expect_error(datasheet(myScenario, name = RunControl))
expect_warning(expect_error(datasheet(myScenario, name = "STSim_RunControl")), "An STSim_ prefix for a datasheet name is no longer required.")
expect_warning(datasheet(myScenario, name = "RunControl", project = "one"), "project argument is ignored when ssimObject is a Project/Scenario or list of these.")
expect_warning(datasheet(myScenario, name = "RunControl", scenario = "one"))
expect_error(datasheet(myScenario, name = "RunControl", summary = "YES"))
expect_error(datasheet(myScenario, name = "RunControl", summary = TRUE, optional = "FALSE"))
expect_error(datasheet(myScenario, name = "RunControl", summary = FALSE, optional = FALSE, empty = "FALSE"))
expect_error(datasheet(myScenario, name = "RunControl", summary = FALSE,
optional = FALSE, empty = FALSE, lookupsAsFactors = "TRUE"))
expect_error(datasheet(myScenario, name = "RunControl", summary = FALSE,
optional = FALSE, empty = FALSE, lookupsAsFactors = TRUE,
sqlStatement = "mySQL"))
expect_error(datasheet(myScenario, name = "RunControl", summary = FALSE,
optional = FALSE, empty = FALSE, lookupsAsFactors = TRUE,
sqlStatement = mySQL, includeKey = "FALSE"))
expect_error(datasheet(myScenario, name = "RunControl", summary = FALSE,
optional = FALSE, empty = FALSE, lookupsAsFactors = TRUE,
sqlStatement = mySQL, includeKey = FALSE, forceElements = "FALSE"))
expect_error(datasheet(myScenario, name = "RunControl", summary = FALSE,
optional = FALSE, empty = FALSE, lookupsAsFactors = TRUE,
sqlStatement = mySQL, includeKey = FALSE, forceElements = FALSE,
fastQuery = "FALSE"))
expect_error(datasheet(name = "RunControl"))
})
# Old code below for saveDatasheet ----
test_that("can retrive saveDatasheet", {
myLibrary1 <- ssimLibrary(name = "C:/gitprojects/rsyncrosim/tests/tempstsim.ssim")
myProject1 <- project(myLibrary1, project = "Definitions")
myScenario1 <- scenario(myProject1, scenario = "My Scenario")
#ssimObject and data and name arguments
Project <- datasheet(myProject1, name = "TransitionType")
Scenario1 <- datasheet(myScenario1, name = "InitialConditionsSpatial")
Scenario2 <- datasheet(myScenario1, name = "RunControl")
expect_message(saveDatasheet(myProject1, data = Project, name = "TransitionType"))
expect_message((saveDatasheet(myScenario1, data = Scenario1, name = "InitialConditionsSpatial")))
expect_message((saveDatasheet(myScenario1, data = Scenario2, name = "RunControl")))
expect_warning(expect_message(expect_message(saveDatasheet(myScenario1, data = list(Scenario1, Scenario2), name = c("stsim_InitialConditionsSpatial", "stsim_RunControl"))))) #will get warning
expect_warning(expect_message(expect_message(saveDatasheet(myScenario1, data = list(Project, Scenario1), name = c("stsim_TransitionType", "stsim_InitialConditionsSpatial"))))) #will get warning
expect_message(expect_type(saveDatasheet(myProject1, data = Project, name = "TransitionType"), "logical"))
expect_message(expect_equal(saveDatasheet(myProject1, data = Project, name = "TransitionType"), TRUE))
#import argument
installPackage("helloworldSpatial")
myLibraryName <- file.path(tempdir(),"testlib_saveDatasheet")
mySession <- session()
myLibrary <- ssimLibrary(name = myLibraryName,
session = mySession,
package = "helloworldSpatial",
template = "example-library")
myProject <- project(myLibrary, project = "Definitions")
myScenario <- scenario(myProject, scenario = "My Scenario")
myDatasheet <- datasheet(myScenario, name = "RunControl")
myDatasheet$MaximumTimestep <- 10
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
import = "TRUE")))
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
import = TRUE)))
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
import = FALSE)))
#path argument
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
path = tempdir())))
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
path = "C:/gitprojects/rsyncrosim")))
#fileData argument
map1 <- datasheetRaster(myScenario, datasheet = "InputDatasheet",
column = "InterceptRasterFile")
inRasters <- raster::stack(map1)
inSheet <- datasheet(myScenario, name="InputDatasheet")
inSheet[1,"InterceptRasterFile"] <- names(inRasters)[1]
expect_message((saveDatasheet(myScenario, data=inSheet, name="InputDatasheet",
fileData=inRasters)))
#append argument
#expect_message(saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl", path = tempdir(), append = TRUE), "The transfer method is not valid for a single row data sheet.") #only throws error when do 'Run Tests'
expect_message(saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl", path = tempdir(), append = FALSE), "Datasheet <helloworldSpatial_RunControl> saved")
expect_message(saveDatasheet(myProject1, data = Project, name = "TransitionType", append = TRUE), "Datasheet <stsim_TransitionType> saved")
expect_message(saveDatasheet(myProject1, data = Project, name = "TransitionType", append = FALSE), "Datasheet <stsim_TransitionType> saved")
expect_message(saveDatasheet(myProject1, data = Project, name = "TransitionType", append = "FALSE"), "Datasheet <stsim_TransitionType> saved")
#forceElements argument
expect_message(expect_type(saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl", forceElements = FALSE), "logical"), "Datasheet <helloworldSpatial_RunControl> saved")
expect_message(expect_type(saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl", forceElements = TRUE), "list"), "Datasheet <helloworldSpatial_RunControl> saved")
expect_message(expect_type(saveDatasheet(myProject1, data = Project, name = "TransitionType", forceElements = TRUE), "list"), "Datasheet <stsim_TransitionType> saved")
expect_message(expect_type(saveDatasheet(myProject1, data = Project, name = "TransitionType", forceElements = FALSE), "logical"), "Datasheet <stsim_TransitionType> saved")
#force argument
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl", force = FALSE)), "Datasheet <helloworldSpatial_RunControl> saved")
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl", force = TRUE)), "Datasheet <helloworldSpatial_RunControl> saved")
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", append = TRUE, force = TRUE)), "Datasheet <stsim_TransitionType> saved")
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", append = FALSE, force = TRUE)), "Datasheet <stsim_TransitionType> saved")
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", append = FALSE, force = FALSE)), "Datasheet <stsim_TransitionType> saved") ## expected prompt but not the case ##
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", append = "FALSE", force = "TRUE")), "Datasheet <stsim_TransitionType> saved")
#breakpoint argument
expect_error((saveDatasheet(myScenario, data = myDatasheet, name = "RunControl", breakpoint = TRUE)), NA)
expect_message((saveDatasheet(myScenario, data = myDatasheet, name = "RunControl", breakpoint = FALSE)), "Datasheet <helloworldSpatial_RunControl> saved")
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", breakpoint = TRUE)), NA)
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", breakpoint = FALSE)), "Datasheet <stsim_TransitionType> saved")
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", breakpoint = "FALSE")), "Datasheet <stsim_TransitionType> saved")
})
test_that("errors work", {
myLibrary1 <- ssimLibrary(name = "C:/gitprojects/rsyncrosim/tests/tempstsim.ssim")
myProject1 <- project(myLibrary1, project = "Definitions")
myScenario1 <- scenario(myProject1, scenario = "My Scenario")
Project <- datasheet(myProject1, name = "TransitionType")
Scenario1 <- datasheet(myScenario1, name = "InitialConditionsSpatial")
Scenario2 <- datasheet(myScenario1, name = "RunControl")
#######
expect_error(saveDatasheet(myScenario1))
expect_error(saveDatasheet(myScenario1, data = Scenario1))
expect_error(saveDatasheet(myScenario1, name = "stsim_InitialConditionsSpatial"))
expect_error(saveDatasheet(myProject1, data = Scenario1, name = "stsim_InitialConditionsSpatial"))
expect_error(saveDatasheet(myLibrary1))
expect_error(saveDatasheet(myScenario1, data = c(Scenario1, Scenario2), name = c("stsim_InitialConditionsSpatial", "stsim_RunControl")))
expect_error(saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
path = errortest))
expect_error(expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
import = NO))))
expect_error((saveDatasheet(myScenario, data=inSheet, name="InputDatasheet",
fileData=list(inRasters))))
expect_message(expect_error(saveDatasheet(myProject1, data = Project, name = "TransitionType", forceElements = "FALSE")), "Datasheet <stsim_TransitionType> saved")
expect_error(expect_message(saveDatasheet(myProject1, data = Project, name = "TransitionType", append = NO), "Datasheet <stsim_TransitionType> saved"))
expect_error(((saveDatasheet(myProject1, data = Project, name = "TransitionType", append = what, force = why))))
expect_error((saveDatasheet(myProject1, data = Project, name = "TransitionType", breakpoint = NO)))
expect_error((saveDatasheet(myProject1, data = Project, name = "TransitionType", breakpoint = "what")))
})
# Old code below for datasheetRaster ----
test_that("no errors", {
installPackage("helloworldSpatial")
mySession1 <- session()
myLibrary1 <- ssimLibrary("C:/gitprojects/rsyncrosim/tests/temphelloworldspatial.ssim")
myProject1 <- project(myLibrary1, project = "Definitions")
myScenario1 <- scenario(myProject1, scenario = "My Scenario")
resultScenario1 <- run(myScenario1)
#
installPackage("stsim")
mySession2 <- session()
myLibrary2 <- ssimLibrary("C:/gitprojects/rsyncrosim/tests/tempstsim.ssim")
myScenario2 <- scenario(myLibrary2, scenario = 22)
resultDatasheet1 <- datasheet(resultScenario1, name = "IntermediateDatasheet")
outputRasterPaths1 <- resultDatasheet1$OutputRasterFile
#
expect_error((datasheetRaster(resultScenario1,datasheet = "IntermediateDatasheet", column = "OutputRasterFile", iteration = 3, timestep = 2)), NA)
#expect_error((datasheetRaster(resultScenario1, datasheet = "IntermediateDatasheet",
# column = "OutputRasterFile",
# subset = expression(grepl("ts20", outputRasterPaths1, fixed = TRUE)))), NA)
expect_error((datasheetRaster(resultScenario1,
datasheet = "IntermediateDatasheet",
column = "OutputRasterFile",
forceElements = TRUE)), NA)
expect_error((datasheetRaster(myScenario2,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "Timestep", filterValue = "5")), NA)
expect_error((datasheetRaster(myScenario2,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
filterColumn = "Timestep", filterValue = "5",
pathOnly = TRUE)), NA)
expect_error((datasheetRaster(myLibrary2,
scenario = 22,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "Timestep", filterValue = "5")), NA)
expect_error(datasheetRaster(myScenario2,
datasheet = "stsim_OutputSpatialState",
timestep = c(5,6),
iteration = c(5,6)), NA)
})
test_that("correct equivalents", {
installPackage("stsim")
mySession4 <- session()
myLibrary4 <- ssimLibrary("C:/gitprojects/rsyncrosim/tests/tempstsim.ssim")
myScenario4 <- scenario(myLibrary4, scenario = 22)
expect_equal((datasheetRaster(myScenario4,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "Timestep", filterValue = "5")), (datasheetRaster(myLibrary4,
scenario = 22,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "Timestep", filterValue = "5")))
expect_equal((datasheetRaster(myLibrary4,
scenario = 22,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "Timestep", filterValue = "5")), datasheetRaster(myLibrary4,
scenario = "Harvest 20 Hectares per Year - spatial ([16] @ 16-Jan-2023 2:50 PM)",
datasheet = "stsim_OutputSpatialState",
timestep = "5",
iteration = "5",
filterColumn = "Timestep", filterValue = "5"))
})
test_that("errors work", {
installPackage("helloworldSpatial")
mySession5 <- session()
myLibrary5 <- ssimLibrary("C:/gitprojects/rsyncrosim/tests/temphelloworldspatial.ssim")
myProject5 <- project(myLibrary5, project = "Definitions")
myScenario5 <- scenario(myProject5, scenario = "My Scenario")
resultScenario5 <- run(myScenario5)
#
installPackage("stsim")
mySession6 <- session()
myLibrary6 <- ssimLibrary("C:/gitprojects/rsyncrosim/tests/tempstsim.ssim")
myScenario6 <- scenario(myLibrary6, scenario = 22)
resultDatasheet5 <- datasheet(resultScenario5, name = "IntermediateDatasheet")
outputRasterPaths5 <- resultDatasheet5$OutputRasterFile
#
expect_error(datasheetRaster(myLibrary5))
expect_error(datasheetRaster(resultScenario5,
datasheet = IntermediateDatasheet,
column = "OutputRasterFile",
forceElements = TRUE))
expect_error(datasheetRaster(resultScenario5,
datasheet = "IntermediateDatasheet",
column = OutputRasterFile,
forceElements = TRUE))
expect_error(datasheetRaster(resultScenario5,
datasheet = "IntermediateDatasheet",
column = "OutputRFile",
forceElements = TRUE))
expect_error(datasheetRaster(myLibrary6,
scenario = "22",
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "Timestep", filterValue = "5"))
expect_error(datasheetRaster(myLibrary6,
scenario = 22,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "TransitionTypeID"))
expect_error(datasheetRaster(myLibrary6,
scenario = 22,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = Timestep, filterValue = "5"))
expect_error(datasheetRaster(resultScenario5,
datasheet = "IntermediateDatasheet",
column = "OutputRasterFile",
subset = expression("ts20")))
#expect_error(expect_equal(resultRaster3, datasheetRaster(resultScenario1,
# datasheet = "IntermediateDatasheet",
# column = "OutputRasterFile")))
})
#test forceElements and pathOnly
syncrosim/rsyncrosim documentation built on Oct. 18, 2024, 1:29 a.m.
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### ApexRMS
### 2024-07-11
### Below script tests the following functions:
### * datasheet
### * datasheetSpatRaster
### * saveDatasheet
# Setup ----
library(terra)
myLibraryPath <- "C:/gitprojects/rsyncrosim/tests_in_progress/test_library/spatial-example.ssim"
mySession <- session("C:/gitprojects/ssimbin3/")
# Tests ----
# Load existing library and runnable scenarios (14, 16)
myLib <- ssimLibrary(myLibraryPath, session = mySession)
myProj <- rsyncrosim::project(myLib, project=1)
myScn <- scenario(myProj, scenario = 14)
mySpatialScn <- scenario(myProj, scenario = 16)
mySpatialResultsScn <- scenario(myProj, scenario = 101)
# Test getting lists of datasheets for each ssimObject
datasheet(myLib)
datasheet(myProj)
datasheet(myScn)
# Load a library datasheet
mpDS <- datasheet(myLib, "core_Multiprocessing")
# Test modifying and saving
mpDS$EnableMultiScenario <- FALSE
saveDatasheet(myLib, mpDS, "core_Multiprocessing")
datasheet(myLib, "core_Multiprocessing")
# Load a project datasheet
terminology <- datasheet(myProj, "stsim_Terminology")
str(terminology)
levels(terminology$AmountUnits)
terminology$AmountUnits <- "acres"
saveDatasheet(myProj, terminology, "stsim_Terminology")
terminologyNoFactors <- datasheet(myProj, "stsim_Terminology", lookupsAsFactors = F)
str(terminologyNoFactors)
datasheet(myProj, "stsim_StateClass", summary = T, optional = T)
datasheet(myProj, name = "core_DistributionType")
datasheet(myProj, name = "core_DistributionType", returnInvisible = T)
# Load scenario datasheet
pipeline <- datasheet(myScn, name = "core_Pipeline")
str(pipeline)
datasheet(myScn, name = "stsim_Transition", includeKey = T)
datasheet(myScn, name = "stsim_Transition", optional =T)
datasheet(myScn, name = "stsim_Transition", returnScenarioInfo = T) # broken
# Load spatial data
ics <- datasheet(mySpatialScn, "stsim_InitialConditionsSpatial")
ics$AgeFileName
r <- datasheetSpatRaster(mySpatialScn, "stsim_InitialConditionsSpatial",
column = "AgeFileName")
plot(r)
outputStates <- datasheet(mySpatialResultsScn, "stsim_OutputSpatialState")
outputStates
r <- datasheetSpatRaster(mySpatialResultsScn,
"stsim_OutputSpatialState",
column = "Filename")
plot(r)
r <- datasheetSpatRaster(mySpatialResultsScn,
"stsim_OutputSpatialState",
column = "Filename",
iteration = 2)
plot(r)
r <- datasheetSpatRaster(mySpatialResultsScn,
"stsim_OutputSpatialState",
column = "Filename",
iteration = 2,
timestep = 2004)
plot(r)
# Old code below for datasheet ----
mySession <- session()
installPackage("helloworldSpatial")
myLibraryName <- file.path(tempdir(),"testlib_datasheet")
myLibrary <- ssimLibrary(name = myLibraryName,
session = mySession,
package = "helloworldSpatial",
forceUpdate = TRUE,
overwrite = TRUE)
myProject <- project(myLibrary, project = "Definitions")
myScenario <- scenario(myProject, scenario = "My Scenario")
mySQL <- (sqlStatement(groupBy = c("ScenarioId"), aggregate = c("MinimumTimestep"), where = list(MinimumTimestep = c(1))))
test_that("no errors", {
expect_error(datasheet(myScenario), NA)
expect_error((datasheet(myScenario, name = NULL, summary = TRUE, optional = FALSE,
empty = FALSE, filterColumn = NULL, filterValue = NULL,
lookupsAsFactors = TRUE, includeKey = FALSE, forceElements = FALSE,
fastQuery = FALSE)), NA)
expect_error((datasheet(myProject, summary = FALSE)), NA)
expect_error((datasheet(myScenario, name = "RunControl", includeKey = TRUE, summary = "TRUE", optional = TRUE)), NA)
#expect_error((datasheet(myScenario, name = "RunControl", forceElements = TRUE, fastQuery = TRUE)), NA)
expect_error((datasheet(myScenario, name = "RunControl", empty = TRUE, lookupsAsFactors = FALSE)), NA)
expect_error((datasheet(myScenario, name = "RunControl", sqlStatement = mySQL)), NA)
expect_error((datasheet(myLibrary, summary = "CORE")), NA)
expect_error((datasheet(myLibrary, name = "core_Backup")), NA)
expect_error((datasheet(myScenario, summary = FALSE, empty = FALSE, lookupsAsFactors = FALSE, optional = FALSE)), NA)
})
test_that("correct statements ignored", {
expect_equal(datasheet(myScenario), (datasheet(myScenario, name = NULL, summary = TRUE, optional = FALSE,
empty = FALSE, filterColumn = NULL, filterValue = NULL,
lookupsAsFactors = TRUE, includeKey = FALSE, forceElements = FALSE,
fastQuery = FALSE)))
expect_equal((datasheet(myScenario, name = NULL, summary = TRUE, optional = FALSE,
empty = FALSE, filterColumn = NULL, filterValue = NULL,
lookupsAsFactors = TRUE, includeKey = FALSE, forceElements = FALSE,
fastQuery = FALSE)), datasheet(myScenario, name = NULL, summary = TRUE, optional = FALSE,
empty = TRUE, filterColumn = NULL, filterValue = NULL,
lookupsAsFactors = FALSE, includeKey = FALSE, forceElements = TRUE,
fastQuery = TRUE))
#expect_equal((datasheet(myScenario, summary = FALSE, empty = FALSE, lookupsAsFactors = FALSE, optional = FALSE)), datasheet(myScenario, summary = FALSE, empty = FALSE, lookupsAsFactors = FALSE, optional = TRUE))
})
test_that("errors work", {
expect_error(datasheet("myScenario"))
expect_error(datasheet(myScenario, name = c(1,2,3)))
expect_error(datasheet(myScenario, name = RunControl))
expect_warning(expect_error(datasheet(myScenario, name = "STSim_RunControl")), "An STSim_ prefix for a datasheet name is no longer required.")
expect_warning(datasheet(myScenario, name = "RunControl", project = "one"), "project argument is ignored when ssimObject is a Project/Scenario or list of these.")
expect_warning(datasheet(myScenario, name = "RunControl", scenario = "one"))
expect_error(datasheet(myScenario, name = "RunControl", summary = "YES"))
expect_error(datasheet(myScenario, name = "RunControl", summary = TRUE, optional = "FALSE"))
expect_error(datasheet(myScenario, name = "RunControl", summary = FALSE, optional = FALSE, empty = "FALSE"))
expect_error(datasheet(myScenario, name = "RunControl", summary = FALSE,
optional = FALSE, empty = FALSE, lookupsAsFactors = "TRUE"))
expect_error(datasheet(myScenario, name = "RunControl", summary = FALSE,
optional = FALSE, empty = FALSE, lookupsAsFactors = TRUE,
sqlStatement = "mySQL"))
expect_error(datasheet(myScenario, name = "RunControl", summary = FALSE,
optional = FALSE, empty = FALSE, lookupsAsFactors = TRUE,
sqlStatement = mySQL, includeKey = "FALSE"))
expect_error(datasheet(myScenario, name = "RunControl", summary = FALSE,
optional = FALSE, empty = FALSE, lookupsAsFactors = TRUE,
sqlStatement = mySQL, includeKey = FALSE, forceElements = "FALSE"))
expect_error(datasheet(myScenario, name = "RunControl", summary = FALSE,
optional = FALSE, empty = FALSE, lookupsAsFactors = TRUE,
sqlStatement = mySQL, includeKey = FALSE, forceElements = FALSE,
fastQuery = "FALSE"))
expect_error(datasheet(name = "RunControl"))
})
# Old code below for saveDatasheet ----
test_that("can retrive saveDatasheet", {
myLibrary1 <- ssimLibrary(name = "C:/gitprojects/rsyncrosim/tests/tempstsim.ssim")
myProject1 <- project(myLibrary1, project = "Definitions")
myScenario1 <- scenario(myProject1, scenario = "My Scenario")
#ssimObject and data and name arguments
Project <- datasheet(myProject1, name = "TransitionType")
Scenario1 <- datasheet(myScenario1, name = "InitialConditionsSpatial")
Scenario2 <- datasheet(myScenario1, name = "RunControl")
expect_message(saveDatasheet(myProject1, data = Project, name = "TransitionType"))
expect_message((saveDatasheet(myScenario1, data = Scenario1, name = "InitialConditionsSpatial")))
expect_message((saveDatasheet(myScenario1, data = Scenario2, name = "RunControl")))
expect_warning(expect_message(expect_message(saveDatasheet(myScenario1, data = list(Scenario1, Scenario2), name = c("stsim_InitialConditionsSpatial", "stsim_RunControl"))))) #will get warning
expect_warning(expect_message(expect_message(saveDatasheet(myScenario1, data = list(Project, Scenario1), name = c("stsim_TransitionType", "stsim_InitialConditionsSpatial"))))) #will get warning
expect_message(expect_type(saveDatasheet(myProject1, data = Project, name = "TransitionType"), "logical"))
expect_message(expect_equal(saveDatasheet(myProject1, data = Project, name = "TransitionType"), TRUE))
#import argument
installPackage("helloworldSpatial")
myLibraryName <- file.path(tempdir(),"testlib_saveDatasheet")
mySession <- session()
myLibrary <- ssimLibrary(name = myLibraryName,
session = mySession,
package = "helloworldSpatial",
template = "example-library")
myProject <- project(myLibrary, project = "Definitions")
myScenario <- scenario(myProject, scenario = "My Scenario")
myDatasheet <- datasheet(myScenario, name = "RunControl")
myDatasheet$MaximumTimestep <- 10
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
import = "TRUE")))
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
import = TRUE)))
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
import = FALSE)))
#path argument
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
path = tempdir())))
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
path = "C:/gitprojects/rsyncrosim")))
#fileData argument
map1 <- datasheetRaster(myScenario, datasheet = "InputDatasheet",
column = "InterceptRasterFile")
inRasters <- raster::stack(map1)
inSheet <- datasheet(myScenario, name="InputDatasheet")
inSheet[1,"InterceptRasterFile"] <- names(inRasters)[1]
expect_message((saveDatasheet(myScenario, data=inSheet, name="InputDatasheet",
fileData=inRasters)))
#append argument
#expect_message(saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl", path = tempdir(), append = TRUE), "The transfer method is not valid for a single row data sheet.") #only throws error when do 'Run Tests'
expect_message(saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl", path = tempdir(), append = FALSE), "Datasheet <helloworldSpatial_RunControl> saved")
expect_message(saveDatasheet(myProject1, data = Project, name = "TransitionType", append = TRUE), "Datasheet <stsim_TransitionType> saved")
expect_message(saveDatasheet(myProject1, data = Project, name = "TransitionType", append = FALSE), "Datasheet <stsim_TransitionType> saved")
expect_message(saveDatasheet(myProject1, data = Project, name = "TransitionType", append = "FALSE"), "Datasheet <stsim_TransitionType> saved")
#forceElements argument
expect_message(expect_type(saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl", forceElements = FALSE), "logical"), "Datasheet <helloworldSpatial_RunControl> saved")
expect_message(expect_type(saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl", forceElements = TRUE), "list"), "Datasheet <helloworldSpatial_RunControl> saved")
expect_message(expect_type(saveDatasheet(myProject1, data = Project, name = "TransitionType", forceElements = TRUE), "list"), "Datasheet <stsim_TransitionType> saved")
expect_message(expect_type(saveDatasheet(myProject1, data = Project, name = "TransitionType", forceElements = FALSE), "logical"), "Datasheet <stsim_TransitionType> saved")
#force argument
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl", force = FALSE)), "Datasheet <helloworldSpatial_RunControl> saved")
expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl", force = TRUE)), "Datasheet <helloworldSpatial_RunControl> saved")
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", append = TRUE, force = TRUE)), "Datasheet <stsim_TransitionType> saved")
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", append = FALSE, force = TRUE)), "Datasheet <stsim_TransitionType> saved")
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", append = FALSE, force = FALSE)), "Datasheet <stsim_TransitionType> saved") ## expected prompt but not the case ##
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", append = "FALSE", force = "TRUE")), "Datasheet <stsim_TransitionType> saved")
#breakpoint argument
expect_error((saveDatasheet(myScenario, data = myDatasheet, name = "RunControl", breakpoint = TRUE)), NA)
expect_message((saveDatasheet(myScenario, data = myDatasheet, name = "RunControl", breakpoint = FALSE)), "Datasheet <helloworldSpatial_RunControl> saved")
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", breakpoint = TRUE)), NA)
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", breakpoint = FALSE)), "Datasheet <stsim_TransitionType> saved")
expect_message((saveDatasheet(myProject1, data = Project, name = "TransitionType", breakpoint = "FALSE")), "Datasheet <stsim_TransitionType> saved")
})
test_that("errors work", {
myLibrary1 <- ssimLibrary(name = "C:/gitprojects/rsyncrosim/tests/tempstsim.ssim")
myProject1 <- project(myLibrary1, project = "Definitions")
myScenario1 <- scenario(myProject1, scenario = "My Scenario")
Project <- datasheet(myProject1, name = "TransitionType")
Scenario1 <- datasheet(myScenario1, name = "InitialConditionsSpatial")
Scenario2 <- datasheet(myScenario1, name = "RunControl")
#######
expect_error(saveDatasheet(myScenario1))
expect_error(saveDatasheet(myScenario1, data = Scenario1))
expect_error(saveDatasheet(myScenario1, name = "stsim_InitialConditionsSpatial"))
expect_error(saveDatasheet(myProject1, data = Scenario1, name = "stsim_InitialConditionsSpatial"))
expect_error(saveDatasheet(myLibrary1))
expect_error(saveDatasheet(myScenario1, data = c(Scenario1, Scenario2), name = c("stsim_InitialConditionsSpatial", "stsim_RunControl")))
expect_error(saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
path = errortest))
expect_error(expect_message((saveDatasheet(ssimObject = myScenario, data = myDatasheet, name = "RunControl",
import = NO))))
expect_error((saveDatasheet(myScenario, data=inSheet, name="InputDatasheet",
fileData=list(inRasters))))
expect_message(expect_error(saveDatasheet(myProject1, data = Project, name = "TransitionType", forceElements = "FALSE")), "Datasheet <stsim_TransitionType> saved")
expect_error(expect_message(saveDatasheet(myProject1, data = Project, name = "TransitionType", append = NO), "Datasheet <stsim_TransitionType> saved"))
expect_error(((saveDatasheet(myProject1, data = Project, name = "TransitionType", append = what, force = why))))
expect_error((saveDatasheet(myProject1, data = Project, name = "TransitionType", breakpoint = NO)))
expect_error((saveDatasheet(myProject1, data = Project, name = "TransitionType", breakpoint = "what")))
})
# Old code below for datasheetRaster ----
test_that("no errors", {
installPackage("helloworldSpatial")
mySession1 <- session()
myLibrary1 <- ssimLibrary("C:/gitprojects/rsyncrosim/tests/temphelloworldspatial.ssim")
myProject1 <- project(myLibrary1, project = "Definitions")
myScenario1 <- scenario(myProject1, scenario = "My Scenario")
resultScenario1 <- run(myScenario1)
#
installPackage("stsim")
mySession2 <- session()
myLibrary2 <- ssimLibrary("C:/gitprojects/rsyncrosim/tests/tempstsim.ssim")
myScenario2 <- scenario(myLibrary2, scenario = 22)
resultDatasheet1 <- datasheet(resultScenario1, name = "IntermediateDatasheet")
outputRasterPaths1 <- resultDatasheet1$OutputRasterFile
#
expect_error((datasheetRaster(resultScenario1,datasheet = "IntermediateDatasheet", column = "OutputRasterFile", iteration = 3, timestep = 2)), NA)
#expect_error((datasheetRaster(resultScenario1, datasheet = "IntermediateDatasheet",
# column = "OutputRasterFile",
# subset = expression(grepl("ts20", outputRasterPaths1, fixed = TRUE)))), NA)
expect_error((datasheetRaster(resultScenario1,
datasheet = "IntermediateDatasheet",
column = "OutputRasterFile",
forceElements = TRUE)), NA)
expect_error((datasheetRaster(myScenario2,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "Timestep", filterValue = "5")), NA)
expect_error((datasheetRaster(myScenario2,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
filterColumn = "Timestep", filterValue = "5",
pathOnly = TRUE)), NA)
expect_error((datasheetRaster(myLibrary2,
scenario = 22,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "Timestep", filterValue = "5")), NA)
expect_error(datasheetRaster(myScenario2,
datasheet = "stsim_OutputSpatialState",
timestep = c(5,6),
iteration = c(5,6)), NA)
})
test_that("correct equivalents", {
installPackage("stsim")
mySession4 <- session()
myLibrary4 <- ssimLibrary("C:/gitprojects/rsyncrosim/tests/tempstsim.ssim")
myScenario4 <- scenario(myLibrary4, scenario = 22)
expect_equal((datasheetRaster(myScenario4,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "Timestep", filterValue = "5")), (datasheetRaster(myLibrary4,
scenario = 22,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "Timestep", filterValue = "5")))
expect_equal((datasheetRaster(myLibrary4,
scenario = 22,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "Timestep", filterValue = "5")), datasheetRaster(myLibrary4,
scenario = "Harvest 20 Hectares per Year - spatial ([16] @ 16-Jan-2023 2:50 PM)",
datasheet = "stsim_OutputSpatialState",
timestep = "5",
iteration = "5",
filterColumn = "Timestep", filterValue = "5"))
})
test_that("errors work", {
installPackage("helloworldSpatial")
mySession5 <- session()
myLibrary5 <- ssimLibrary("C:/gitprojects/rsyncrosim/tests/temphelloworldspatial.ssim")
myProject5 <- project(myLibrary5, project = "Definitions")
myScenario5 <- scenario(myProject5, scenario = "My Scenario")
resultScenario5 <- run(myScenario5)
#
installPackage("stsim")
mySession6 <- session()
myLibrary6 <- ssimLibrary("C:/gitprojects/rsyncrosim/tests/tempstsim.ssim")
myScenario6 <- scenario(myLibrary6, scenario = 22)
resultDatasheet5 <- datasheet(resultScenario5, name = "IntermediateDatasheet")
outputRasterPaths5 <- resultDatasheet5$OutputRasterFile
#
expect_error(datasheetRaster(myLibrary5))
expect_error(datasheetRaster(resultScenario5,
datasheet = IntermediateDatasheet,
column = "OutputRasterFile",
forceElements = TRUE))
expect_error(datasheetRaster(resultScenario5,
datasheet = "IntermediateDatasheet",
column = OutputRasterFile,
forceElements = TRUE))
expect_error(datasheetRaster(resultScenario5,
datasheet = "IntermediateDatasheet",
column = "OutputRFile",
forceElements = TRUE))
expect_error(datasheetRaster(myLibrary6,
scenario = "22",
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "Timestep", filterValue = "5"))
expect_error(datasheetRaster(myLibrary6,
scenario = 22,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = "TransitionTypeID"))
expect_error(datasheetRaster(myLibrary6,
scenario = 22,
datasheet = "stsim_OutputSpatialState",
timestep = 5,
iteration = 5,
filterColumn = Timestep, filterValue = "5"))
expect_error(datasheetRaster(resultScenario5,
datasheet = "IntermediateDatasheet",
column = "OutputRasterFile",
subset = expression("ts20")))
#expect_error(expect_equal(resultRaster3, datasheetRaster(resultScenario1,
# datasheet = "IntermediateDatasheet",
# column = "OutputRasterFile")))
})
#test forceElements and pathOnly
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