TODO.md

In steveped/ngsReports: Load FastqQC reports and other NGS related files

TODO

• [x] Check how themes are handled & use theme_get() as default if none supplied
• [x] Ensure factor levels are correct for Before_filtering and After_filtering
• [x] Add line plot to plotInsertSize()
• [ ] Add options to facet by base for plotBaseQuals() for a FastpDataList object
• [x] Add Overrepresented Sequences for FastpData and FastpDataList
• [ ] Build more plotting/reporting functions for fastp reports
• [ ] Add methylation logs from SammyB
• [ ] Add samtools stats as a new S4 class

steveped/ngsReports documentation built on July 24, 2024, 10:45 a.m.